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The map label for this gene is 116696142

Identifier: 116696142

GI number: 116696142

Start: 2504205

End: 2505122

Strand: Direct

Name: 116696142

Synonym: H16_B2206

Alternate gene names: NA

Gene position: 2504205-2505122 (Clockwise)

Preceding gene: 116696141

Following gene: 116696143

Centisome position: 85.98

GC content: 71.79

Gene sequence:

>918_bases
ATGCTGCGCGATCAGTGCGGGACGGTATGCAGCGTGTCGAGGAGTTACGTGGCCGGTACTCAAATCGCAACGCAAGACAC
CCCTGTCGCCGCCGACCATGGCAGCCAGGCGGGCCCGGCGGCCTCGGCCGGCAGTTCCTTCCATGCCGCGCTGCGCATCC
TGCCGCCAGCGCAGCGCCAGGCCATGTTCGAGATCTATGCGTTCTGCCGCGCGGTCGACGACATCGCCGACGGCAACGCA
CCGCGCGCCGAGCGCCTTGCCGCACTCGATGCCTGGCGCCACGACATCGCCGCCTGCTACACCGGCAATCCGCCTCGCGC
CCTGCAGCCGCTGAGCGCGCAGATCCGCGCCTTCGACCTGCAGCAGCAGGATTTCCTCGCCGTGATCGACGGCATGACCA
TGGACGTGGTGCAGGACATCCGCGCCCCCGACGCGGCCACCCTCGACCTGTATTGCGATCGCGTCGCCAGCGCTGTCGGC
CGGCTGGCGGTGCGCGTGTTCGGCCTGGAAGAAGCGTGCGGCATCGCGCTCGCGCACCACCTGGGCCGCGCACTGCAGCT
GACCAATATCCTGCGCGATATCGACGAAGACGCTGCCATCGGCCGGCTCTACCTGCCGGCGGAAGCGCTGGCCGCGGCCG
GCATCGGCGCGGACACGCCCCAGGCCGTGGTGGCCCACCCCGCCGTCGGCCAGGCCTGCGCGGCCGTGGCGCGCGAGGCC
CAGGCGCACTACGACCAGGCCTACGCCATCATGGCGCGCTGCCCGTCGCGGCAGGTGCGCTCGCCGCGCATCATGGCCGA
GGTCTACCACCGCATCCTGGCGCGGCTGCGCACGCAGGGCTGGCGCGCGCCGCGCCAGCGCGTGCGCCTGCCGCGCGCCC
AATTGCTCTGGATCTTGCTGCGCCACGCCATTGGCTGA

Upstream 100 bases:

>100_bases
CGCGCCGGCACCGGGGCCGCCGCTGCGGCAGTCTTGCGACGAGTGAAATTGCTATAATCTGCCGACCCACAACCGCCCTC
CCGCCAGTGGGCGCGCACGG

Downstream 100 bases:

>100_bases
GCGCTGCCCCCGATGCATGCCGGGCGCGGCCGCGCCGTGCGCCGGCACAAGGAGTCTGCATGTCGATGAACGAGACCGCC
TTTGCCACGGCAGTGCCACG

Product: putative phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLRDQCGTVCSVSRSYVAGTQIATQDTPVAADHGSQAGPAASAGSSFHAALRILPPAQRQAMFEIYAFCRAVDDIADGNA
PRAERLAALDAWRHDIAACYTGNPPRALQPLSAQIRAFDLQQQDFLAVIDGMTMDVVQDIRAPDAATLDLYCDRVASAVG
RLAVRVFGLEEACGIALAHHLGRALQLTNILRDIDEDAAIGRLYLPAEALAAAGIGADTPQAVVAHPAVGQACAAVAREA
QAHYDQAYAIMARCPSRQVRSPRIMAEVYHRILARLRTQGWRAPRQRVRLPRAQLLWILLRHAIG

Sequences:

>Translated_305_residues
MLRDQCGTVCSVSRSYVAGTQIATQDTPVAADHGSQAGPAASAGSSFHAALRILPPAQRQAMFEIYAFCRAVDDIADGNA
PRAERLAALDAWRHDIAACYTGNPPRALQPLSAQIRAFDLQQQDFLAVIDGMTMDVVQDIRAPDAATLDLYCDRVASAVG
RLAVRVFGLEEACGIALAHHLGRALQLTNILRDIDEDAAIGRLYLPAEALAAAGIGADTPQAVVAHPAVGQACAAVAREA
QAHYDQAYAIMARCPSRQVRSPRIMAEVYHRILARLRTQGWRAPRQRVRLPRAQLLWILLRHAIG
>Mature_305_residues
MLRDQCGTVCSVSRSYVAGTQIATQDTPVAADHGSQAGPAASAGSSFHAALRILPPAQRQAMFEIYAFCRAVDDIADGNA
PRAERLAALDAWRHDIAACYTGNPPRALQPLSAQIRAFDLQQQDFLAVIDGMTMDVVQDIRAPDAATLDLYCDRVASAVG
RLAVRVFGLEEACGIALAHHLGRALQLTNILRDIDEDAAIGRLYLPAEALAAAGIGADTPQAVVAHPAVGQACAAVAREA
QAHYDQAYAIMARCPSRQVRSPRIMAEVYHRILARLRTQGWRAPRQRVRLPRAQLLWILLRHAIG

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene. Probably part of an operon y4aABCD involved in the synthesis of an isoprenoid compound [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR017828
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 32911; Mature: 32911

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRDQCGTVCSVSRSYVAGTQIATQDTPVAADHGSQAGPAASAGSSFHAALRILPPAQRQ
CCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHH
AMFEIYAFCRAVDDIADGNAPRAERLAALDAWRHDIAACYTGNPPRALQPLSAQIRAFDL
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHCHHHHHHHHHCC
QQQDFLAVIDGMTMDVVQDIRAPDAATLDLYCDRVASAVGRLAVRVFGLEEACGIALAHH
CHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LGRALQLTNILRDIDEDAAIGRLYLPAEALAAAGIGADTPQAVVAHPAVGQACAAVAREA
HHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHH
QAHYDQAYAIMARCPSRQVRSPRIMAEVYHRILARLRTQGWRAPRQRVRLPRAQLLWILL
HHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHH
RHAIG
HHHCC
>Mature Secondary Structure
MLRDQCGTVCSVSRSYVAGTQIATQDTPVAADHGSQAGPAASAGSSFHAALRILPPAQRQ
CCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHH
AMFEIYAFCRAVDDIADGNAPRAERLAALDAWRHDIAACYTGNPPRALQPLSAQIRAFDL
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHCHHHHHHHHHCC
QQQDFLAVIDGMTMDVVQDIRAPDAATLDLYCDRVASAVGRLAVRVFGLEEACGIALAHH
CHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LGRALQLTNILRDIDEDAAIGRLYLPAEALAAAGIGADTPQAVVAHPAVGQACAAVAREA
HHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHH
QAHYDQAYAIMARCPSRQVRSPRIMAEVYHRILARLRTQGWRAPRQRVRLPRAQLLWILL
HHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHH
RHAIG
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]