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The map label for this gene is ydeL [H]

Identifier: 116695827

GI number: 116695827

Start: 2137469

End: 2139031

Strand: Direct

Name: ydeL [H]

Synonym: H16_B1891

Alternate gene names: 116695827

Gene position: 2137469-2139031 (Clockwise)

Preceding gene: 116695826

Following gene: 116695828

Centisome position: 73.39

GC content: 70.12

Gene sequence:

>1563_bases
ATGAGCCTGAAGTCTCCCACCACCCTCTGGTCCCAGCTGTTCCAGCAGCATGCCCACTCGGGCCTGAGCCTGCAGGGCAA
GATCCGCCAGATGCTGGTCTCGGCCATCCTTGACGAGCAGCTGCCGCAGGGCGAGCCGCTGCCCAGCAGCCGCGAGCTGT
CGGCGCAACTGCGCGTGGCGCGCAACACGGTGGTACTGGCCTACCAGCAGCTGGTCGATGAAGGCTACCTGGTGGCGCGC
GAGCGCAGCGGCTACTTCGTCAACCCGGAGATCCTGGGCACGCGCGTGAGCGGCGTGGCCTCGCTGCGCGGCGAGGCGGT
GCCCGCCCGCTCAGGCGAGCCGGACTGGGAGCGGCGCTTTGTGTTCCGCCCCACGCAGCAGCGCAATATCGTCAAGCGCG
CCAACTGGCGCGACTACCCCTATCCCTTCATCTACGGCCAGTACGACCCGGTGCTGTTCCCCACGGCGGACTGGCGAGAA
TGCTGCCTGAAGGCGCTCAGCGTGCTCGACATCCACGACTGGGCCCAGGACATGATCCTGCGCGACGACGAATCGCTGGT
GCAGCAGATCCGCACCCGCGTGCTGCCGCGCCGCGGCGTGTGGGCCGGCGCCGACGAGATCGTGGTGACCGTGGGCGCGC
AGCAGGCGCTGTACCTGCTGGCCGACCTGCTGGTCAGCCCCGACACGCCGGTGGGGATCGAGGACCCCGGCTATCCGGAC
GCACGCAATATCTTTGGCTCGCACACCTCCCACCTGGTGCCGCTGCCGGTCGACGGCGACGGCCTGACCCTGTCTGACGC
GCAACGCGCCTGCGACTACGTCTACGTGACCCCGGGCCACCAGTGCCCCACCACCGTCACCATGCCGCTGGCGCGCCGCC
AGGCCCTGCTGCGCCAGGCCGAGGAAGCTGACTTCGTGCTGATCGAGGACGACTACGAAAGCGAAAGCCGCTTCGAAGGC
GACCCCACCCCCACGCTCAAGAGCCTGGACCGCAGCAACCGCGTGATCTATGTCGGCAGCCTGTCCAAGAGCCTGGCGCC
GGGGCTGCGCATCGGCTATATCGTCGGGCCGGCGGCACTGATCGCCGAGCTGCGCGGCGCGCGGCGGCTGATGCTTCGGC
ATCCGTCGGCGTATATCCAGCGCGCGTTCTCGCTGTTCCTGTCGCTGGGCCACTATGACGCGCACCTGCGCCGGCTGGCG
GCCGCGCACCGCGAGCGCGCCGAAGCCGTGCTGGCGGCACTGGCCACGCATATGCCTGACTTCCGCGCGGTGCCGATCGC
CGGCGGCGCCTCATGCTGGATCGAGGGGCCGTCCTGGCTCGATGCCGATGCGCTGGCGCGGCTGGCCGAGTTGCAGGGCG
TGCTGATAGAGCCCGGCAGCGTCTTCTTCATGGCCGAGCCCGCGCCGCGCAATGGCTTCCGGCTCGGATACTCGTCGATC
TCGCTGGACCGCATCGAGCCCGGCATCCGCGTGCTGGCGGGCGTGGCGCGTGAGCTGCAGGCCACCGCCAGCGGCGCCAC
AACCATCGCCGCCGTCACTTCCCGGGTCCGTCCCGCGGCCTGA

Upstream 100 bases:

>100_bases
CGCCCGGACCTGCATGAGTATTGATGACTGACCATGACTGACGTGGCGCGCCGGTGCGGTATGCTGGCGCGCTTCGCCGT
CTAGGCAACGCCCCTGCCCC

Downstream 100 bases:

>100_bases
GCCGGCCCGCGGCGGTGTCTGCCGCCGCTGGCCCAAGCGATTGTCCCGAACTGGCGCTACAGCGCCGCGCGCGGCTTCCC
TATCCTCGAGTCATGGCCGG

Product: MocR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MSLKSPTTLWSQLFQQHAHSGLSLQGKIRQMLVSAILDEQLPQGEPLPSSRELSAQLRVARNTVVLAYQQLVDEGYLVAR
ERSGYFVNPEILGTRVSGVASLRGEAVPARSGEPDWERRFVFRPTQQRNIVKRANWRDYPYPFIYGQYDPVLFPTADWRE
CCLKALSVLDIHDWAQDMILRDDESLVQQIRTRVLPRRGVWAGADEIVVTVGAQQALYLLADLLVSPDTPVGIEDPGYPD
ARNIFGSHTSHLVPLPVDGDGLTLSDAQRACDYVYVTPGHQCPTTVTMPLARRQALLRQAEEADFVLIEDDYESESRFEG
DPTPTLKSLDRSNRVIYVGSLSKSLAPGLRIGYIVGPAALIAELRGARRLMLRHPSAYIQRAFSLFLSLGHYDAHLRRLA
AAHRERAEAVLAALATHMPDFRAVPIAGGASCWIEGPSWLDADALARLAELQGVLIEPGSVFFMAEPAPRNGFRLGYSSI
SLDRIEPGIRVLAGVARELQATASGATTIAAVTSRVRPAA

Sequences:

>Translated_520_residues
MSLKSPTTLWSQLFQQHAHSGLSLQGKIRQMLVSAILDEQLPQGEPLPSSRELSAQLRVARNTVVLAYQQLVDEGYLVAR
ERSGYFVNPEILGTRVSGVASLRGEAVPARSGEPDWERRFVFRPTQQRNIVKRANWRDYPYPFIYGQYDPVLFPTADWRE
CCLKALSVLDIHDWAQDMILRDDESLVQQIRTRVLPRRGVWAGADEIVVTVGAQQALYLLADLLVSPDTPVGIEDPGYPD
ARNIFGSHTSHLVPLPVDGDGLTLSDAQRACDYVYVTPGHQCPTTVTMPLARRQALLRQAEEADFVLIEDDYESESRFEG
DPTPTLKSLDRSNRVIYVGSLSKSLAPGLRIGYIVGPAALIAELRGARRLMLRHPSAYIQRAFSLFLSLGHYDAHLRRLA
AAHRERAEAVLAALATHMPDFRAVPIAGGASCWIEGPSWLDADALARLAELQGVLIEPGSVFFMAEPAPRNGFRLGYSSI
SLDRIEPGIRVLAGVARELQATASGATTIAAVTSRVRPAA
>Mature_519_residues
SLKSPTTLWSQLFQQHAHSGLSLQGKIRQMLVSAILDEQLPQGEPLPSSRELSAQLRVARNTVVLAYQQLVDEGYLVARE
RSGYFVNPEILGTRVSGVASLRGEAVPARSGEPDWERRFVFRPTQQRNIVKRANWRDYPYPFIYGQYDPVLFPTADWREC
CLKALSVLDIHDWAQDMILRDDESLVQQIRTRVLPRRGVWAGADEIVVTVGAQQALYLLADLLVSPDTPVGIEDPGYPDA
RNIFGSHTSHLVPLPVDGDGLTLSDAQRACDYVYVTPGHQCPTTVTMPLARRQALLRQAEEADFVLIEDDYESESRFEGD
PTPTLKSLDRSNRVIYVGSLSKSLAPGLRIGYIVGPAALIAELRGARRLMLRHPSAYIQRAFSLFLSLGHYDAHLRRLAA
AHRERAEAVLAALATHMPDFRAVPIAGGASCWIEGPSWLDADALARLAELQGVLIEPGSVFFMAEPAPRNGFRLGYSSIS
LDRIEPGIRVLAGVARELQATASGATTIAAVTSRVRPAA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=318, Percent_Identity=26.7295597484277, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI33469970, Length=318, Percent_Identity=26.7295597484277, Blast_Score=107, Evalue=2e-23,
Organism=Escherichia coli, GI1787710, Length=490, Percent_Identity=26.9387755102041, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1790797, Length=476, Percent_Identity=25.8403361344538, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 57346; Mature: 57215

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKSPTTLWSQLFQQHAHSGLSLQGKIRQMLVSAILDEQLPQGEPLPSSRELSAQLRVA
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
RNTVVLAYQQLVDEGYLVARERSGYFVNPEILGTRVSGVASLRGEAVPARSGEPDWERRF
HHHHHHHHHHHHCCCEEEEEECCCEEECHHHHCHHHHHHHHHCCCCCCCCCCCCCHHCEE
VFRPTQQRNIVKRANWRDYPYPFIYGQYDPVLFPTADWRECCLKALSVLDIHDWAQDMIL
EECCCHHHHHHHHCCCCCCCCCEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHC
RDDESLVQQIRTRVLPRRGVWAGADEIVVTVGAQQALYLLADLLVSPDTPVGIEDPGYPD
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCC
ARNIFGSHTSHLVPLPVDGDGLTLSDAQRACDYVYVTPGHQCPTTVTMPLARRQALLRQA
HHHHCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCEEEHHHHHHHHHHHHH
EEADFVLIEDDYESESRFEGDPTPTLKSLDRSNRVIYVGSLSKSLAPGLRIGYIVGPAAL
CCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCHHHCCCCEEEEEHHHHHH
IAELRGARRLMLRHPSAYIQRAFSLFLSLGHYDAHLRRLAAAHRERAEAVLAALATHMPD
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FRAVPIAGGASCWIEGPSWLDADALARLAELQGVLIEPGSVFFMAEPAPRNGFRLGYSSI
CEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCEEECCCCEEEEECCCCCCCCEECCCCE
SLDRIEPGIRVLAGVARELQATASGATTIAAVTSRVRPAA
EHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SLKSPTTLWSQLFQQHAHSGLSLQGKIRQMLVSAILDEQLPQGEPLPSSRELSAQLRVA
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
RNTVVLAYQQLVDEGYLVARERSGYFVNPEILGTRVSGVASLRGEAVPARSGEPDWERRF
HHHHHHHHHHHHCCCEEEEEECCCEEECHHHHCHHHHHHHHHCCCCCCCCCCCCCHHCEE
VFRPTQQRNIVKRANWRDYPYPFIYGQYDPVLFPTADWRECCLKALSVLDIHDWAQDMIL
EECCCHHHHHHHHCCCCCCCCCEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHC
RDDESLVQQIRTRVLPRRGVWAGADEIVVTVGAQQALYLLADLLVSPDTPVGIEDPGYPD
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCC
ARNIFGSHTSHLVPLPVDGDGLTLSDAQRACDYVYVTPGHQCPTTVTMPLARRQALLRQA
HHHHCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCEEEHHHHHHHHHHHHH
EEADFVLIEDDYESESRFEGDPTPTLKSLDRSNRVIYVGSLSKSLAPGLRIGYIVGPAAL
CCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCHHHCCCCEEEEEHHHHHH
IAELRGARRLMLRHPSAYIQRAFSLFLSLGHYDAHLRRLAAAHRERAEAVLAALATHMPD
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FRAVPIAGGASCWIEGPSWLDADALARLAELQGVLIEPGSVFFMAEPAPRNGFRLGYSSI
CEEEECCCCCEEEECCCCCCCHHHHHHHHHHCCEEECCCCEEEEECCCCCCCCEECCCCE
SLDRIEPGIRVLAGVARELQATASGATTIAAVTSRVRPAA
EHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]