Click here to switch to the map view.

The map label for this gene is potD [C]

Identifier: 116695764

GI number: 116695764

Start: 2066242

End: 2067327

Strand: Direct

Name: potD [C]

Synonym: H16_B1828

Alternate gene names: 116695764

Gene position: 2066242-2067327 (Clockwise)

Preceding gene: 116695763

Following gene: 116695765

Centisome position: 70.94

GC content: 64.73

Gene sequence:

>1086_bases
ATGAACGACCACAGCCCCATCAACTCTTCTCGCCGGCGTGCCCTCAAGGTCGCCGCTGCCGGCCTTGGCACGCTTGCCGC
GCCCGCAGTGCTGCAATATGCGCGCGCGCAGTCCAAGCGCATCGTGGTGCGCGACGACGGCGGCATCTACACCAAGGCCT
ACAGCGCGGTGTACTACAAGCCGTTCACCGAGAAGACCGGCATCGAGGTCGTGGGCGTGCAGGCCAACGCCGAACCGGTG
GCGCAGATCCGCAGCATGGTCGAGACGAGGAACTACACCTGGGACATGGCCAAGATCAGCCAGCCGGCCATCCTGCTGCT
GACGCAGGGCGGCAAGGTCTACCTGGAGAAGCACGGCCTGGAGGGCGACGCCACCATCAAGACCATTCCGGCGCATTTCA
TGTCGCCCTACGGCGTGGGCACCAACGTCTACAGCACGGTCCTGGCCTATCGCACCGACGCCTTCAAGGGCCGCAAGGCA
CCGTCGTCGTGGGCCGACTTCTGGAACGTCAAGGACTTCCCCGGCCGCCGCGCCCTGCGCAAGCACCCGTTCGACACGCT
GGAAGAGTCGCTGATGGCCGCCGGCACGGCGACCTCCGCGCTCTATCCGCTCAATATCGACCAGGCCATCGCCAACCTGG
AGAAGATCAAGGCCAACGTTGACGTGTGGTGGAACTCCGGCGCCCAGGTAGAGCAGATGCTCAAGTCCGGCGAGGTCGAC
ATGGTGGCCACCTGGGTGTCGCGCGCACAGAGCGCGGCCGCCTCCGGTGCCCAGGTCGGCATCGTCTGGAACCAGAACCT
GTGGGGCGTGGACAACTGGTCCATCCTGGCCGGCACGCCGAATGCGCAAGCCTGCCGCGAATTCATCAAGTTCGCGTCCG
ACCCCAAGCGCATGGCCTCGCTGGTGGAGTACTTCCCGGCAGGCGTGACCCAGCCGGATGCCTTCAAGTACATCAAGCCC
GAGGTTGCGAAGAACTGCCCGACCCACCCCGACAACATCAAGTCGGGCGTGCAGATCAACGCCAAGTACTGGCTCGATAA
CCAGGCCGCGGTGATGGAGAAGTTCAACGGCTGGATCCTCAAGTGA

Upstream 100 bases:

>100_bases
CACGGCATCAAGCGCATGCTCGACCCGCGCGACCTGTTCAACCCCGGCCGGCTGCTGCCGTCCCCACCTTCCCAGCAATA
ACGGCAATCAAGGAGCTCGC

Downstream 100 bases:

>100_bases
TCTGAACCTCTTCACCAGACACCACAAGCAACGACACGATGCCGAATTCCAAACTCAAGATTTCCGGGCTGACCAAGCGT
TATGGCGACTTCGTCGCGCT

Product: ABC transporter periplasmic protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: None

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MNDHSPINSSRRRALKVAAAGLGTLAAPAVLQYARAQSKRIVVRDDGGIYTKAYSAVYYKPFTEKTGIEVVGVQANAEPV
AQIRSMVETRNYTWDMAKISQPAILLLTQGGKVYLEKHGLEGDATIKTIPAHFMSPYGVGTNVYSTVLAYRTDAFKGRKA
PSSWADFWNVKDFPGRRALRKHPFDTLEESLMAAGTATSALYPLNIDQAIANLEKIKANVDVWWNSGAQVEQMLKSGEVD
MVATWVSRAQSAAASGAQVGIVWNQNLWGVDNWSILAGTPNAQACREFIKFASDPKRMASLVEYFPAGVTQPDAFKYIKP
EVAKNCPTHPDNIKSGVQINAKYWLDNQAAVMEKFNGWILK

Sequences:

>Translated_361_residues
MNDHSPINSSRRRALKVAAAGLGTLAAPAVLQYARAQSKRIVVRDDGGIYTKAYSAVYYKPFTEKTGIEVVGVQANAEPV
AQIRSMVETRNYTWDMAKISQPAILLLTQGGKVYLEKHGLEGDATIKTIPAHFMSPYGVGTNVYSTVLAYRTDAFKGRKA
PSSWADFWNVKDFPGRRALRKHPFDTLEESLMAAGTATSALYPLNIDQAIANLEKIKANVDVWWNSGAQVEQMLKSGEVD
MVATWVSRAQSAAASGAQVGIVWNQNLWGVDNWSILAGTPNAQACREFIKFASDPKRMASLVEYFPAGVTQPDAFKYIKP
EVAKNCPTHPDNIKSGVQINAKYWLDNQAAVMEKFNGWILK
>Mature_361_residues
MNDHSPINSSRRRALKVAAAGLGTLAAPAVLQYARAQSKRIVVRDDGGIYTKAYSAVYYKPFTEKTGIEVVGVQANAEPV
AQIRSMVETRNYTWDMAKISQPAILLLTQGGKVYLEKHGLEGDATIKTIPAHFMSPYGVGTNVYSTVLAYRTDAFKGRKA
PSSWADFWNVKDFPGRRALRKHPFDTLEESLMAAGTATSALYPLNIDQAIANLEKIKANVDVWWNSGAQVEQMLKSGEVD
MVATWVSRAQSAAASGAQVGIVWNQNLWGVDNWSILAGTPNAQACREFIKFASDPKRMASLVEYFPAGVTQPDAFKYIKP
EVAKNCPTHPDNIKSGVQINAKYWLDNQAAVMEKFNGWILK

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39738; Mature: 39738

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDHSPINSSRRRALKVAAAGLGTLAAPAVLQYARAQSKRIVVRDDGGIYTKAYSAVYYK
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEEEEEEC
PFTEKTGIEVVGVQANAEPVAQIRSMVETRNYTWDMAKISQPAILLLTQGGKVYLEKHGL
CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEHHHCCCCEEEEEECCCEEEEEECCC
EGDATIKTIPAHFMSPYGVGTNVYSTVLAYRTDAFKGRKAPSSWADFWNVKDFPGRRALR
CCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHH
KHPFDTLEESLMAAGTATSALYPLNIDQAIANLEKIKANVDVWWNSGAQVEQMLKSGEVD
HCCHHHHHHHHHHCCCHHCEEECCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCHH
MVATWVSRAQSAAASGAQVGIVWNQNLWGVDNWSILAGTPNAQACREFIKFASDPKRMAS
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHH
LVEYFPAGVTQPDAFKYIKPEVAKNCPTHPDNIKSGVQINAKYWLDNQAAVMEKFNGWIL
HHHHHCCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCEEEEEEEEECCHHHHHHHCCCEEC
K
C
>Mature Secondary Structure
MNDHSPINSSRRRALKVAAAGLGTLAAPAVLQYARAQSKRIVVRDDGGIYTKAYSAVYYK
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEEEEEEC
PFTEKTGIEVVGVQANAEPVAQIRSMVETRNYTWDMAKISQPAILLLTQGGKVYLEKHGL
CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEHHHCCCCEEEEEECCCEEEEEECCC
EGDATIKTIPAHFMSPYGVGTNVYSTVLAYRTDAFKGRKAPSSWADFWNVKDFPGRRALR
CCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHH
KHPFDTLEESLMAAGTATSALYPLNIDQAIANLEKIKANVDVWWNSGAQVEQMLKSGEVD
HCCHHHHHHHHHHCCCHHCEEECCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCHH
MVATWVSRAQSAAASGAQVGIVWNQNLWGVDNWSILAGTPNAQACREFIKFASDPKRMAS
HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHH
LVEYFPAGVTQPDAFKYIKPEVAKNCPTHPDNIKSGVQINAKYWLDNQAAVMEKFNGWIL
HHHHHCCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCEEEEEEEEECCHHHHHHHCCCEEC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA