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The map label for this gene is ybhD [H]

Identifier: 116695592

GI number: 116695592

Start: 1864776

End: 1865711

Strand: Direct

Name: ybhD [H]

Synonym: H16_B1653

Alternate gene names: 116695592

Gene position: 1864776-1865711 (Clockwise)

Preceding gene: 116695589

Following gene: 116695596

Centisome position: 64.03

GC content: 71.79

Gene sequence:

>936_bases
ATGAAAATCAACCTGTCGATGCGCGACATCGAAACCACGCTGGTGCTTGGCCGCACGCTCAACTTCCGCCAGGCCGCCAG
CCAGCTGCACGTGTCGCAGTCCGCCCTGTCCACGCAGATCCTGCGCATCGAGGAATCCCTCGGCGTGCGCCTGTTCGACC
GCACCACCCGCAACGTGCGCCTGACCGCGGCCGGCCAGGTCTTCATGCAGCAGGCCGCGCTGCTGCAGGCGGCGTTCCGC
GGCGCCATCGACGCCGTGACCGGCATTGCCAGCGCCGAGCGCGGCCAGGTGGCGGTGGCGGCGCTGCCCTCGCTGGCGGC
GCGCATGCTGCCGCGCGTGCTGATGGCCTACCACCAGGCGCGCCCGGAGGTGGCGCTGAAGGTATTCGATACCCTCTCCG
GCCCGGCCTTCGACCTGGTGCGCGCCGGCGACGTGGATTTCGCGCTGACCGCGGCCGACCCGCAACAGGCTGACCTGCAG
TATGAGCCGCTGCTGTCGGACCGCTTCGTGCTGCTGATCCCGTCGGCGCACCCGCTCGCGCGCAGCCCCGGGCCGCTGCG
CTGGGCCGATACCGCCAGCGCGCCGCATGTGTCGATGACGCACCCGAGCAGCGTGCGCCAGTACGCGGAATGGGCCTTCC
TGCAGAACCGCATCCGCTTCCAGCCGGTATTCGAGGCCGAGCGCCTGGCCACCATCGCGGCCATGGTCGAATGCGGCTTC
GGCGTGGCCGCGCTGCCAGAGATCGCGGCCGGAACGGTGCGCCAGCCCGGCATTGTCGAGCGCCTGCTGACCGCGCCGGT
GACCGAGCGCTCGATCGGGCTGGTGACCTCGCGCAACCGCAGCCTGTCGCCGGCGGCTGCCGAACTGGCGGCGGCGGTGC
GCGCGCAGCTGGCGAGTCCGCCCGTCCAGGATACGGTGGACACGACGGCCCGGTGA

Upstream 100 bases:

>100_bases
CTTGCTTTGATTGAAGAAGTCGATTCTATGGATAGAATGATCCACAAATCAGATCAATCGTGTGATTCGGCCGGCGGACG
CCGCCGGCCCGCTGCCGCAG

Downstream 100 bases:

>100_bases
ACTAGCAGATGCTGGCTGGCCATGGCGCGCGGGCGACGCCGGCCTGGTTCCAAGCCAACCTGGTGCGCCCGCCGCTGCGC
GGCGTCACGGAAAACAAGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKINLSMRDIETTLVLGRTLNFRQAASQLHVSQSALSTQILRIEESLGVRLFDRTTRNVRLTAAGQVFMQQAALLQAAFR
GAIDAVTGIASAERGQVAVAALPSLAARMLPRVLMAYHQARPEVALKVFDTLSGPAFDLVRAGDVDFALTAADPQQADLQ
YEPLLSDRFVLLIPSAHPLARSPGPLRWADTASAPHVSMTHPSSVRQYAEWAFLQNRIRFQPVFEAERLATIAAMVECGF
GVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLVTSRNRSLSPAAAELAAAVRAQLASPPVQDTVDTTAR

Sequences:

>Translated_311_residues
MKINLSMRDIETTLVLGRTLNFRQAASQLHVSQSALSTQILRIEESLGVRLFDRTTRNVRLTAAGQVFMQQAALLQAAFR
GAIDAVTGIASAERGQVAVAALPSLAARMLPRVLMAYHQARPEVALKVFDTLSGPAFDLVRAGDVDFALTAADPQQADLQ
YEPLLSDRFVLLIPSAHPLARSPGPLRWADTASAPHVSMTHPSSVRQYAEWAFLQNRIRFQPVFEAERLATIAAMVECGF
GVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLVTSRNRSLSPAAAELAAAVRAQLASPPVQDTVDTTAR
>Mature_311_residues
MKINLSMRDIETTLVLGRTLNFRQAASQLHVSQSALSTQILRIEESLGVRLFDRTTRNVRLTAAGQVFMQQAALLQAAFR
GAIDAVTGIASAERGQVAVAALPSLAARMLPRVLMAYHQARPEVALKVFDTLSGPAFDLVRAGDVDFALTAADPQQADLQ
YEPLLSDRFVLLIPSAHPLARSPGPLRWADTASAPHVSMTHPSSVRQYAEWAFLQNRIRFQPVFEAERLATIAAMVECGF
GVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLVTSRNRSLSPAAAELAAAVRAQLASPPVQDTVDTTAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=26.8041237113402, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788748, Length=298, Percent_Identity=31.2080536912752, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790399, Length=295, Percent_Identity=27.1186440677966, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI157672245, Length=173, Percent_Identity=32.3699421965318, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788887, Length=306, Percent_Identity=26.4705882352941, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787601, Length=203, Percent_Identity=28.0788177339901, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789204, Length=257, Percent_Identity=24.124513618677, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=26.3157894736842, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790208, Length=262, Percent_Identity=30.1526717557252, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=23.448275862069, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=26.8774703557312, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=29.2134831460674, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367136, Length=291, Percent_Identity=25.4295532646048, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787949, Length=179, Percent_Identity=27.9329608938547, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790262, Length=259, Percent_Identity=24.7104247104247, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=234, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33492; Mature: 33492

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINLSMRDIETTLVLGRTLNFRQAASQLHVSQSALSTQILRIEESLGVRLFDRTTRNVR
CEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEE
LTAAGQVFMQQAALLQAAFRGAIDAVTGIASAERGQVAVAALPSLAARMLPRVLMAYHQA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
RPEVALKVFDTLSGPAFDLVRAGDVDFALTAADPQQADLQYEPLLSDRFVLLIPSAHPLA
CHHHHHHHHHHCCCCHHHHEECCCCCEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCC
RSPGPLRWADTASAPHVSMTHPSSVRQYAEWAFLQNRIRFQPVFEAERLATIAAMVECGF
CCCCCCEECCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
GVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLVTSRNRSLSPAAAELAAAVRAQLASP
CHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
PVQDTVDTTAR
CCCCCCCCCCC
>Mature Secondary Structure
MKINLSMRDIETTLVLGRTLNFRQAASQLHVSQSALSTQILRIEESLGVRLFDRTTRNVR
CEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEE
LTAAGQVFMQQAALLQAAFRGAIDAVTGIASAERGQVAVAALPSLAARMLPRVLMAYHQA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
RPEVALKVFDTLSGPAFDLVRAGDVDFALTAADPQQADLQYEPLLSDRFVLLIPSAHPLA
CHHHHHHHHHHCCCCHHHHEECCCCCEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCC
RSPGPLRWADTASAPHVSMTHPSSVRQYAEWAFLQNRIRFQPVFEAERLATIAAMVECGF
CCCCCCEECCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
GVAALPEIAAGTVRQPGIVERLLTAPVTERSIGLVTSRNRSLSPAAAELAAAVRAQLASP
CHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
PVQDTVDTTAR
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]