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The map label for this gene is arnA [H]

Identifier: 116695580

GI number: 116695580

Start: 1853068

End: 1854009

Strand: Direct

Name: arnA [H]

Synonym: H16_B1641

Alternate gene names: 116695580

Gene position: 1853068-1854009 (Clockwise)

Preceding gene: 116695579

Following gene: 116695581

Centisome position: 63.62

GC content: 69.85

Gene sequence:

>942_bases
ATGCGCGCCGTCGTCTTCGGCTACCACAATGTCGGCGACCGCTGCCTGCGCGTGCTGCATGCGCGCGGCGTGGAGGTTGC
GCTGGTGATCACGCACCGCGACCGCCCCGACGAGAACATCTGGTTCCGCCGCGTGGCCGACACCGCCGCCGAGCTGGGCA
TCCCCTTCGTCTATGGCGAGGACCCTGCCGATCCCGCGATCGCCCAGGCCGTGCGCGACGCGCACCCGGACGTCATCTTC
TCGTTCTACTACCGCGCCATGATCCCGGCGGGCGTGCTGGCGCTGGCCCCCGGCGGCGCCTTCAACATGCACGGCTCGCT
GCTGCCCAAGTACCGCGGCCGCGTGCCGGTGAACTGGGCGGTACTGCACGGCGAGACCGAGACCGGCGCCACGCTGCACG
CCATGGAAGCCAAGCCTGACGCGGGCTATATCGTCGACCAGACCGCGGTGCCGATCCTGCCGGACGACACTGCGGGCGAA
GTCTTCGAGAAAGTCACCGTCGCCGCCGAACAGACGTTGTGGCGCGTCCTGCCCGCGATGATCGCCGGGCACACGCCGCA
ACACCCCAACCGGCTGGCCGAGGGCAGCTACTTCTCCGGGCGCAAGCCGGAAGACGGCCGCATCGACTGGAGCCGCCCGG
CCGCCGAGGTCTACAACCTCGTGCGCGCCGTCGCGCCGCCCTATCCCGGCGCCTTTACCGACCTTGCCGGGCACCGCTTC
ATTGTGGCGCAGGCGCGCCGGCCGCTGCCGGAGCTTGCGCTGGCGCTGCCCGCCGGCACGGCGCCCGGCCTGCATGTGCA
TGACGGCCAGATCATCGGCCTGTGCGGCGACGGCGGCCTGGTCATGGTCACCCGATTGCTGGCACAGGATGGCTCGGCTC
TCACGCCGCAAGCCTTCGCCAAACTTATCCATACCGAATCATCCAACGAGGAAAGCCGATGA

Upstream 100 bases:

>100_bases
GCATCCACCAGGAAGTGCGCGACCGCCCGCGCTACCGCATCAAGGCCGTGCTGGAAGCGGACCGGCGTGTCACGCCGGCT
GCCGCTGGCGCGGAGCAATG

Downstream 100 bases:

>100_bases
AAAAGGTCCTGATTCTTGGCGTCAACGGCTTCATCGGCCATCACCTGACGCGCCGCATCCTGGAAACCACGCCGTGGGAG
GTCTACGGCATGGACATGTC

Product: putative formyltransferase

Products: NA

Alternate protein names: UDP-4-amino-4-deoxy-L-arabinose formyltransferase; ArnAFT; UDP-L-Ara4N formyltransferase; UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; ArnADH; UDP-GlcUA decarboxylase; UDP-glucuronic acid dehydrogenase [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MRAVVFGYHNVGDRCLRVLHARGVEVALVITHRDRPDENIWFRRVADTAAELGIPFVYGEDPADPAIAQAVRDAHPDVIF
SFYYRAMIPAGVLALAPGGAFNMHGSLLPKYRGRVPVNWAVLHGETETGATLHAMEAKPDAGYIVDQTAVPILPDDTAGE
VFEKVTVAAEQTLWRVLPAMIAGHTPQHPNRLAEGSYFSGRKPEDGRIDWSRPAAEVYNLVRAVAPPYPGAFTDLAGHRF
IVAQARRPLPELALALPAGTAPGLHVHDGQIIGLCGDGGLVMVTRLLAQDGSALTPQAFAKLIHTESSNEESR

Sequences:

>Translated_313_residues
MRAVVFGYHNVGDRCLRVLHARGVEVALVITHRDRPDENIWFRRVADTAAELGIPFVYGEDPADPAIAQAVRDAHPDVIF
SFYYRAMIPAGVLALAPGGAFNMHGSLLPKYRGRVPVNWAVLHGETETGATLHAMEAKPDAGYIVDQTAVPILPDDTAGE
VFEKVTVAAEQTLWRVLPAMIAGHTPQHPNRLAEGSYFSGRKPEDGRIDWSRPAAEVYNLVRAVAPPYPGAFTDLAGHRF
IVAQARRPLPELALALPAGTAPGLHVHDGQIIGLCGDGGLVMVTRLLAQDGSALTPQAFAKLIHTESSNEESR
>Mature_313_residues
MRAVVFGYHNVGDRCLRVLHARGVEVALVITHRDRPDENIWFRRVADTAAELGIPFVYGEDPADPAIAQAVRDAHPDVIF
SFYYRAMIPAGVLALAPGGAFNMHGSLLPKYRGRVPVNWAVLHGETETGATLHAMEAKPDAGYIVDQTAVPILPDDTAGE
VFEKVTVAAEQTLWRVLPAMIAGHTPQHPNRLAEGSYFSGRKPEDGRIDWSRPAAEVYNLVRAVAPPYPGAFTDLAGHRF
IVAQARRPLPELALALPAGTAPGLHVHDGQIIGLCGDGGLVMVTRLLAQDGSALTPQAFAKLIHTESSNEESR

Specific function: Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabin

COG id: COG0223

COG function: function code J; Methionyl-tRNA formyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the sugar epimerase family. UDP-glucuronic acid decarboxylase subfamily [H]

Homologues:

Organism=Homo sapiens, GI21614513, Length=319, Percent_Identity=23.5109717868339, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI238814322, Length=234, Percent_Identity=22.2222222222222, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI1788589, Length=297, Percent_Identity=42.4242424242424, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1789683, Length=248, Percent_Identity=28.2258064516129, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI133930964, Length=303, Percent_Identity=23.1023102310231, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021168
- InterPro:   IPR001509
- InterPro:   IPR005793
- InterPro:   IPR002376
- InterPro:   IPR011034
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase; PF02911 Formyl_trans_C; PF00551 Formyl_trans_N [H]

EC number: =2.1.2.13; =1.1.1.305 [H]

Molecular weight: Translated: 33819; Mature: 33819

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAVVFGYHNVGDRCLRVLHARGVEVALVITHRDRPDENIWFRRVADTAAELGIPFVYGE
CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEECC
DPADPAIAQAVRDAHPDVIFSFYYRAMIPAGVLALAPGGAFNMHGSLLPKYRGRVPVNWA
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHCCCCCEEEE
VLHGETETGATLHAMEAKPDAGYIVDQTAVPILPDDTAGEVFEKVTVAAEQTLWRVLPAM
EEECCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IAGHTPQHPNRLAEGSYFSGRKPEDGRIDWSRPAAEVYNLVRAVAPPYPGAFTDLAGHRF
HCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCEE
IVAQARRPLPELALALPAGTAPGLHVHDGQIIGLCGDGGLVMVTRLLAQDGSALTPQAFA
EEECCCCCCHHHHHCCCCCCCCCEEEECCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHH
KLIHTESSNEESR
HHHHCCCCCCCCC
>Mature Secondary Structure
MRAVVFGYHNVGDRCLRVLHARGVEVALVITHRDRPDENIWFRRVADTAAELGIPFVYGE
CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEECC
DPADPAIAQAVRDAHPDVIFSFYYRAMIPAGVLALAPGGAFNMHGSLLPKYRGRVPVNWA
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHCCCCCEEEE
VLHGETETGATLHAMEAKPDAGYIVDQTAVPILPDDTAGEVFEKVTVAAEQTLWRVLPAM
EEECCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IAGHTPQHPNRLAEGSYFSGRKPEDGRIDWSRPAAEVYNLVRAVAPPYPGAFTDLAGHRF
HCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCEE
IVAQARRPLPELALALPAGTAPGLHVHDGQIIGLCGDGGLVMVTRLLAQDGSALTPQAFA
EEECCCCCCHHHHHCCCCCCCCCEEEECCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHH
KLIHTESSNEESR
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA