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The map label for this gene is ydaM [H]

Identifier: 116695531

GI number: 116695531

Start: 1792916

End: 1794721

Strand: Direct

Name: ydaM [H]

Synonym: H16_B1591

Alternate gene names: 116695531

Gene position: 1792916-1794721 (Clockwise)

Preceding gene: 116695529

Following gene: 116695538

Centisome position: 61.56

GC content: 72.26

Gene sequence:

>1806_bases
ATGGCCTTGTGGCAACGTGCGCGCCGGCGTGAGTCCGAACCCGGGGGCATGGCACCGCCGGCCGGACGCAGCCGCAGCCT
GAAGCGCAAGCTGGCGATCGCCACGGCGGTCGGCGGGCTCTGCACCCTGGTGCTCGCCGCGCTGGTGATGGCCCGCTCGT
ATGGCGACTTCACCTCGGCGCGGCAGAACCTGTACGACATCTCGGCATACCGCGAGCTGCTCGAGGCCGCCAACGTGCTG
TCCGCGGAACGTGGACCGGCCAACAGCGTGCTGGGAGATCCACCCTCGCCCAACACCTCCGCGCGTGAGCGCCTGCAAGC
GTTCCGCGCCCGCAGCGACGCCGCGCTGGCGCGCCTGGCCGCGCCGCCGCCGGCACCCTTCGGCCTGCACAACCACCACC
TGCCGCCGCTGATGGTCGAGCGCGTGCGCGAACGCCTGGCGCGGGCGCGGGCCGAGATCGACGAACTCGCCGGGCGGCCG
CGCCAGGACCGTGACATGGACGAGATCCGCCATGCCATCGAAAGCATGTTCGAGGTCGTGGACGCGCTGCAGCCGGCCAT
CGCCTGGCAGGTGCGCGAACTGTCCGCCTGCGACGACGGCCTGGCGGCGCCGGCGCTGACCGGCAGGATGCTGGGCGACC
TGCGCGAGTATGGCGGGCGCATCGCCTCGCAGATCATGGCGCCCGTGGCGGCGCGCCAGCCGATGCCGGTGCAGAGCCTG
GTGGACGCCACGCGCTCGCGCGGCCGGCTGCTGGAGCTATGGCAGCTGGCGGGGCCGGCGTACAACATGTTCGGCGCCGT
GCCCGCGCTGGAGCAGGCATACGCCGACGCCGGCCACCAGTTCTTCGGCCAGGGCCTGTCGATGATCGACAGCCTGGTTG
CGCAGGGCCGCGTCTCGGGCAATTACTCGATGACGCCGACGGAGCTGACCAACCGCTACGTGCGCACGCTGGAGCCGCTG
GAGCGGTTGCGCAGGGTATTCCTGGACGAGGTGGTCGCGCATTTCACCGCAGCGCGCGCACAAGCGCTGCGCGAACTGAC
GGCAGCGTGCGGCACGTCGGCGCTGATCCTTGCCGTGCTGGGCTACGTGCTGGTGTTCATGCAGCGCTCGGTGATCCTGC
CGCTGCTGCGCGCCGGCGACGAAGTGATCGGCCTGGCCGAGGCGCGCGAACACCCGCACTACGCTGCGCCAGCGGCGTCC
GCCAGGCCCGCGGCGGAGATGCGGCGCCTGTTCGATGCCATCGAGATCCTGCGCCGCAAGCTGCGCGAGCGCGCCTCGCT
GACCGAACAACTGGAACACCAGGCGCGCACCGACAGCCTGACCGGGCTGCTGAACCGGCGCGCGCTGGAGCTGGTGGCCG
CGCAGTACGCGGCACACGACAGCGCCAGCCTGGTGCTGATCGACGTGGACCGCTTCAAGCAGATCAACGACCGCCATGGC
CATGCCGCCGGCGACCAGGTGCTGCGCGACATCGCTGCGATGATGCGCGCGCTGGTGCCGCCCGAAGGCGTGCTGGCACG
CTTCGGCGGCGAGGAGTTCGCGCTGCTGCTGCCGCACGGCAGGCCGGGCGAGGCCGCCGCGCTGGCCGAAACCCTGCGCG
CGGAAATCGCGTCGCGCCCGGTCTTCCTGTCGGGCAGCACCCAGCTGTGCGTCACCGCCAGCTTCGGCGTGGCCATCGGG
CGCGGCGGCGAGCGTCACTGGCAGCGGCTGTTCGGCGCGGCCGACGCTGCCATGTACCGCGCCAAGGCCGAAGGGCGCAA
CTGCGTGCGCGAGGCACAGCGCGAGGAAGGGGTGGCAGCCGGCTGA

Upstream 100 bases:

>100_bases
GAGCAAATTCGGCCTGGCCGCTGCGCCTTTTCGTCAATAATGGCGGTAATGACAAATCTTGCAGACATCGCCCGGCAAGC
TGCCGCCGGGAGCAAACCTT

Downstream 100 bases:

>100_bases
AGCAGGCCGGCCCCGGCACCAGCACGGAAACGATGGACGAAAAAAACCCGCATCGCTGCGGGCTTCTTCCACATATCCGG
CACCGCCGCCTCGGTATCGA

Product: putative GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 600

Protein sequence:

>601_residues
MALWQRARRRESEPGGMAPPAGRSRSLKRKLAIATAVGGLCTLVLAALVMARSYGDFTSARQNLYDISAYRELLEAANVL
SAERGPANSVLGDPPSPNTSARERLQAFRARSDAALARLAAPPPAPFGLHNHHLPPLMVERVRERLARARAEIDELAGRP
RQDRDMDEIRHAIESMFEVVDALQPAIAWQVRELSACDDGLAAPALTGRMLGDLREYGGRIASQIMAPVAARQPMPVQSL
VDATRSRGRLLELWQLAGPAYNMFGAVPALEQAYADAGHQFFGQGLSMIDSLVAQGRVSGNYSMTPTELTNRYVRTLEPL
ERLRRVFLDEVVAHFTAARAQALRELTAACGTSALILAVLGYVLVFMQRSVILPLLRAGDEVIGLAEAREHPHYAAPAAS
ARPAAEMRRLFDAIEILRRKLRERASLTEQLEHQARTDSLTGLLNRRALELVAAQYAAHDSASLVLIDVDRFKQINDRHG
HAAGDQVLRDIAAMMRALVPPEGVLARFGGEEFALLLPHGRPGEAAALAETLRAEIASRPVFLSGSTQLCVTASFGVAIG
RGGERHWQRLFGAADAAMYRAKAEGRNCVREAQREEGVAAG

Sequences:

>Translated_601_residues
MALWQRARRRESEPGGMAPPAGRSRSLKRKLAIATAVGGLCTLVLAALVMARSYGDFTSARQNLYDISAYRELLEAANVL
SAERGPANSVLGDPPSPNTSARERLQAFRARSDAALARLAAPPPAPFGLHNHHLPPLMVERVRERLARARAEIDELAGRP
RQDRDMDEIRHAIESMFEVVDALQPAIAWQVRELSACDDGLAAPALTGRMLGDLREYGGRIASQIMAPVAARQPMPVQSL
VDATRSRGRLLELWQLAGPAYNMFGAVPALEQAYADAGHQFFGQGLSMIDSLVAQGRVSGNYSMTPTELTNRYVRTLEPL
ERLRRVFLDEVVAHFTAARAQALRELTAACGTSALILAVLGYVLVFMQRSVILPLLRAGDEVIGLAEAREHPHYAAPAAS
ARPAAEMRRLFDAIEILRRKLRERASLTEQLEHQARTDSLTGLLNRRALELVAAQYAAHDSASLVLIDVDRFKQINDRHG
HAAGDQVLRDIAAMMRALVPPEGVLARFGGEEFALLLPHGRPGEAAALAETLRAEIASRPVFLSGSTQLCVTASFGVAIG
RGGERHWQRLFGAADAAMYRAKAEGRNCVREAQREEGVAAG
>Mature_600_residues
ALWQRARRRESEPGGMAPPAGRSRSLKRKLAIATAVGGLCTLVLAALVMARSYGDFTSARQNLYDISAYRELLEAANVLS
AERGPANSVLGDPPSPNTSARERLQAFRARSDAALARLAAPPPAPFGLHNHHLPPLMVERVRERLARARAEIDELAGRPR
QDRDMDEIRHAIESMFEVVDALQPAIAWQVRELSACDDGLAAPALTGRMLGDLREYGGRIASQIMAPVAARQPMPVQSLV
DATRSRGRLLELWQLAGPAYNMFGAVPALEQAYADAGHQFFGQGLSMIDSLVAQGRVSGNYSMTPTELTNRYVRTLEPLE
RLRRVFLDEVVAHFTAARAQALRELTAACGTSALILAVLGYVLVFMQRSVILPLLRAGDEVIGLAEAREHPHYAAPAASA
RPAAEMRRLFDAIEILRRKLRERASLTEQLEHQARTDSLTGLLNRRALELVAAQYAAHDSASLVLIDVDRFKQINDRHGH
AAGDQVLRDIAAMMRALVPPEGVLARFGGEEFALLLPHGRPGEAAALAETLRAEIASRPVFLSGSTQLCVTASFGVAIGR
GGERHWQRLFGAADAAMYRAKAEGRNCVREAQREEGVAAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=43.1034482758621, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082007, Length=181, Percent_Identity=36.4640883977901, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=35.632183908046, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693134, Length=189, Percent_Identity=32.8042328042328, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=33.879781420765, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI1787541, Length=166, Percent_Identity=34.3373493975904, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=33.1360946745562, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788085, Length=190, Percent_Identity=29.4736842105263, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787056, Length=125, Percent_Identity=36.8, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=31.2138728323699, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=32.9113924050633, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=189, Percent_Identity=31.2169312169312, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 65408; Mature: 65277

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALWQRARRRESEPGGMAPPAGRSRSLKRKLAIATAVGGLCTLVLAALVMARSYGDFTSA
CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RQNLYDISAYRELLEAANVLSAERGPANSVLGDPPSPNTSARERLQAFRARSDAALARLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
APPPAPFGLHNHHLPPLMVERVRERLARARAEIDELAGRPRQDRDMDEIRHAIESMFEVV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
DALQPAIAWQVRELSACDDGLAAPALTGRMLGDLREYGGRIASQIMAPVAARQPMPVQSL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VDATRSRGRLLELWQLAGPAYNMFGAVPALEQAYADAGHQFFGQGLSMIDSLVAQGRVSG
HHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NYSMTPTELTNRYVRTLEPLERLRRVFLDEVVAHFTAARAQALRELTAACGTSALILAVL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
GYVLVFMQRSVILPLLRAGDEVIGLAEAREHPHYAAPAASARPAAEMRRLFDAIEILRRK
HHHHHHHHHHHHHHHHHCCCHHEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LRERASLTEQLEHQARTDSLTGLLNRRALELVAAQYAAHDSASLVLIDVDRFKQINDRHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCC
HAAGDQVLRDIAAMMRALVPPEGVLARFGGEEFALLLPHGRPGEAAALAETLRAEIASRP
CCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC
VFLSGSTQLCVTASFGVAIGRGGERHWQRLFGAADAAMYRAKAEGRNCVREAQREEGVAA
EEECCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
G
C
>Mature Secondary Structure 
ALWQRARRRESEPGGMAPPAGRSRSLKRKLAIATAVGGLCTLVLAALVMARSYGDFTSA
CHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RQNLYDISAYRELLEAANVLSAERGPANSVLGDPPSPNTSARERLQAFRARSDAALARLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
APPPAPFGLHNHHLPPLMVERVRERLARARAEIDELAGRPRQDRDMDEIRHAIESMFEVV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
DALQPAIAWQVRELSACDDGLAAPALTGRMLGDLREYGGRIASQIMAPVAARQPMPVQSL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VDATRSRGRLLELWQLAGPAYNMFGAVPALEQAYADAGHQFFGQGLSMIDSLVAQGRVSG
HHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NYSMTPTELTNRYVRTLEPLERLRRVFLDEVVAHFTAARAQALRELTAACGTSALILAVL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
GYVLVFMQRSVILPLLRAGDEVIGLAEAREHPHYAAPAASARPAAEMRRLFDAIEILRRK
HHHHHHHHHHHHHHHHHCCCHHEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LRERASLTEQLEHQARTDSLTGLLNRRALELVAAQYAAHDSASLVLIDVDRFKQINDRHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHCCCC
HAAGDQVLRDIAAMMRALVPPEGVLARFGGEEFALLLPHGRPGEAAALAETLRAEIASRP
CCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC
VFLSGSTQLCVTASFGVAIGRGGERHWQRLFGAADAAMYRAKAEGRNCVREAQREEGVAA
EEECCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]