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The map label for this gene is phnF [C]

Identifier: 116695233

GI number: 116695233

Start: 1446208

End: 1446942

Strand: Direct

Name: phnF [C]

Synonym: H16_B1289

Alternate gene names: 116695233

Gene position: 1446208-1446942 (Clockwise)

Preceding gene: 116695225

Following gene: 116695234

Centisome position: 49.66

GC content: 66.94

Gene sequence:

>735_bases
ATGTCTGATCGAGAAGTGGAACGGGGTTCCGGCGTGGCGGTATGGCGCCAGATTGGCGAGGCGCTGGCGGACGACATCCG
CAAGAAGCTGTACCTGCCCGGCGAACAGCTGCCCCCTGAGCCTGAACTGGCCACGCGCTTCGCGGTCAACCGCCACACCA
TCCGCCGCGCCATGGGCGAGCTGGAGTTGAGCGGCCTGGTGCGGATCGAGCAGGGCCGCGGCACCTTCGTGCAGGAGCAT
GCGATCGACTACGCGATCGGACGCCGCACGCGCTTCTCGCAAAACCTGGCCGCGCAGGGCATGCGCGGACATGCCGAGAT
CATCGACAGCCAGGTGGTGCGCGCGCCGGAAGTGGCAAAGCAACTGGGCCTGGCGCGCACGGCGGAGATCCTGCACGTGC
AGATGATCGGCAAGGCCGAAGAGCGCACCATCGACGTTGCCGAGCATTACTTTGACCTCAAGCGCTTCCCGGGCATCGAC
GAGGTGCTGCGCGCCAGGCAATCGGTATCGCGCGCGCTGGCGCATTTCGGCATTGCCGACTACACGCGCAAGTGGTCGCG
CATCACGGCGGCCATGCCCAGCGCCCCGGTGGCGCGCCTGCTGAACCAGCCGAAGACGCGCCCGGTGCTGCAGGTGGAGG
CGCTGAACGTTGATATCGACGGGGCGCCGGTGCAGTACAGCGTGGTGCGGTTTGCGGGGGACTGGGTGCAGCTGACGGTT
TCCGACAGTGATTGA

Upstream 100 bases:

>100_bases
GACGGGGCGGGGCATTGCTCGGGCACCCCGCCATCGCGGCGCGGTTGAGGCACAATCGCATGGCAATGGTGAACGCTTGA
TGACAAGAGGGCAGCGCGAG

Downstream 100 bases:

>100_bases
GGCGGAGCGACGTGGCATTGGTCTAGACATCCGGCTGTCATCTGCCTGCGCTAAGGTGTCTGCGGTCCAGACCACAAAAC
CAGGGCAGACGCCGCCGCCG

Product: phosphonate operon transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSDREVERGSGVAVWRQIGEALADDIRKKLYLPGEQLPPEPELATRFAVNRHTIRRAMGELELSGLVRIEQGRGTFVQEH
AIDYAIGRRTRFSQNLAAQGMRGHAEIIDSQVVRAPEVAKQLGLARTAEILHVQMIGKAEERTIDVAEHYFDLKRFPGID
EVLRARQSVSRALAHFGIADYTRKWSRITAAMPSAPVARLLNQPKTRPVLQVEALNVDIDGAPVQYSVVRFAGDWVQLTV
SDSD

Sequences:

>Translated_244_residues
MSDREVERGSGVAVWRQIGEALADDIRKKLYLPGEQLPPEPELATRFAVNRHTIRRAMGELELSGLVRIEQGRGTFVQEH
AIDYAIGRRTRFSQNLAAQGMRGHAEIIDSQVVRAPEVAKQLGLARTAEILHVQMIGKAEERTIDVAEHYFDLKRFPGID
EVLRARQSVSRALAHFGIADYTRKWSRITAAMPSAPVARLLNQPKTRPVLQVEALNVDIDGAPVQYSVVRFAGDWVQLTV
SDSD
>Mature_243_residues
SDREVERGSGVAVWRQIGEALADDIRKKLYLPGEQLPPEPELATRFAVNRHTIRRAMGELELSGLVRIEQGRGTFVQEHA
IDYAIGRRTRFSQNLAAQGMRGHAEIIDSQVVRAPEVAKQLGLARTAEILHVQMIGKAEERTIDVAEHYFDLKRFPGIDE
VLRARQSVSRALAHFGIADYTRKWSRITAAMPSAPVARLLNQPKTRPVLQVEALNVDIDGAPVQYSVVRFAGDWVQLTVS
DSD

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=235, Percent_Identity=32.7659574468085, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1786950, Length=234, Percent_Identity=26.9230769230769, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI87082252, Length=237, Percent_Identity=23.6286919831224, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788418, Length=222, Percent_Identity=23.8738738738739, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27271; Mature: 27140

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDREVERGSGVAVWRQIGEALADDIRKKLYLPGEQLPPEPELATRFAVNRHTIRRAMGE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LELSGLVRIEQGRGTFVQEHAIDYAIGRRTRFSQNLAAQGMRGHAEIIDSQVVRAPEVAK
HHHHCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
QLGLARTAEILHVQMIGKAEERTIDVAEHYFDLKRFPGIDEVLRARQSVSRALAHFGIAD
HHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
YTRKWSRITAAMPSAPVARLLNQPKTRPVLQVEALNVDIDGAPVQYSVVRFAGDWVQLTV
HHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEEHEEEECCEEEEEE
SDSD
ECCC
>Mature Secondary Structure 
SDREVERGSGVAVWRQIGEALADDIRKKLYLPGEQLPPEPELATRFAVNRHTIRRAMGE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LELSGLVRIEQGRGTFVQEHAIDYAIGRRTRFSQNLAAQGMRGHAEIIDSQVVRAPEVAK
HHHHCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
QLGLARTAEILHVQMIGKAEERTIDVAEHYFDLKRFPGIDEVLRARQSVSRALAHFGIAD
HHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
YTRKWSRITAAMPSAPVARLLNQPKTRPVLQVEALNVDIDGAPVQYSVVRFAGDWVQLTV
HHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEEHEEEECCEEEEEE
SDSD
ECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]