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The map label for this gene is allR [H]

Identifier: 116695225

GI number: 116695225

Start: 1439133

End: 1439969

Strand: Direct

Name: allR [H]

Synonym: H16_B1281

Alternate gene names: 116695225

Gene position: 1439133-1439969 (Clockwise)

Preceding gene: 116695222

Following gene: 116695233

Centisome position: 49.41

GC content: 71.57

Gene sequence:

>837_bases
ATGCCCCGACCGAAAGCTGCCCAACCTCCGATCGAACCCGCCGACGCGCCCCGCACGCGCGAACGCCGCCAGCGCGTGCA
ATCGGCGGTCACCGGCATGGCCGTGCTCAAGGGACTGGCCCGGCTGGGCGGACGCGCCAGCCTGACCGCGCTGGCCGCGC
ATATCGACGAAAGCCCGGCCAAGGTGCACCGCTACCTGGTCAGCCTGGTGGAAGAGGGGCTGGTGGCGCAGGAGACGGGC
ACGCAGCAATACCACCTGGGCTTCGAGGCGCTGCAGATCGGCATGGCGGCGATGCGCCAGGCCGACCCGATCCGGCTGGC
CGAAGCCTCGCTGGTACGCCTGCGTGAAGCGCTGGAGGTGACCTGCTTTGTCGCGGTGATGGGCAACAAGGGGCCGACCA
TCATGCGCTTTGAGGAACCGGGTTTGCCGGTGACGGTGAATGTGCGCGCGGGCTCGGTGATGCCATTGCTGTGGTCGGCC
ACCGGGCGCGTGTTCCTGGGCCTGCTCGATGAAAAGCGCGTGCATGCCCAGGCCGAGGAGGAGCTGGCCGCGGCAAGTCC
GGCGCGGCTGGCGTTGCTCGATGGCAAAGACCCCATCGGTGCGCTGCGCCGCGCGGTGCAGGCCGACGACTGCGCCTGGG
TGCGCGACACCAACCTGACCGGCATCAGCGCCGTGGCGGCGCCGGTGCGCGACTACACCGGGCGCGTCTGCGCAGTGCTG
ACGGCGCTGGGCGCCACCGGCGGCTTTGATCCCGCCATCGACGGGCCCATCGGCAGCGCCGTGCGGCGCGAGGCGCGCGC
GGTCAGCACGGCGCTGGGGTTCAACCCCGGGGCCTGA

Upstream 100 bases:

>100_bases
TGATTGAATGCGGGTTAACCTTGAACTGTCCTGCAGCGGCCGCATGGCTTGATCCGCCTTCCATGTGATGACCGCTCACC
GTTTGCCGGATCTTCCCGCC

Downstream 100 bases:

>100_bases
TCCGATCGCTCAGCGGGTGAAGCCGCCATCGGCCAGCAGCGAACGGCCGTAGCCAGCGCTACTGTGTTGCCGGCCTGACC
GGACGCAGGCTCGTACAAGC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: Negative regulator of allantoin and glyoxylate utilization operons [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MPRPKAAQPPIEPADAPRTRERRQRVQSAVTGMAVLKGLARLGGRASLTALAAHIDESPAKVHRYLVSLVEEGLVAQETG
TQQYHLGFEALQIGMAAMRQADPIRLAEASLVRLREALEVTCFVAVMGNKGPTIMRFEEPGLPVTVNVRAGSVMPLLWSA
TGRVFLGLLDEKRVHAQAEEELAAASPARLALLDGKDPIGALRRAVQADDCAWVRDTNLTGISAVAAPVRDYTGRVCAVL
TALGATGGFDPAIDGPIGSAVRREARAVSTALGFNPGA

Sequences:

>Translated_278_residues
MPRPKAAQPPIEPADAPRTRERRQRVQSAVTGMAVLKGLARLGGRASLTALAAHIDESPAKVHRYLVSLVEEGLVAQETG
TQQYHLGFEALQIGMAAMRQADPIRLAEASLVRLREALEVTCFVAVMGNKGPTIMRFEEPGLPVTVNVRAGSVMPLLWSA
TGRVFLGLLDEKRVHAQAEEELAAASPARLALLDGKDPIGALRRAVQADDCAWVRDTNLTGISAVAAPVRDYTGRVCAVL
TALGATGGFDPAIDGPIGSAVRREARAVSTALGFNPGA
>Mature_277_residues
PRPKAAQPPIEPADAPRTRERRQRVQSAVTGMAVLKGLARLGGRASLTALAAHIDESPAKVHRYLVSLVEEGLVAQETGT
QQYHLGFEALQIGMAAMRQADPIRLAEASLVRLREALEVTCFVAVMGNKGPTIMRFEEPGLPVTVNVRAGSVMPLLWSAT
GRVFLGLLDEKRVHAQAEEELAAASPARLALLDGKDPIGALRRAVQADDCAWVRDTNLTGISAVAAPVRDYTGRVCAVLT
ALGATGGFDPAIDGPIGSAVRREARAVSTALGFNPGA

Specific function: Negative regulator of allantoin and glyoxylate utilization operons. Binds to the gcl promoter and to the allS- allA intergenic region [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29380; Mature: 29249

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPKAAQPPIEPADAPRTRERRQRVQSAVTGMAVLKGLARLGGRASLTALAAHIDESPA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH
KVHRYLVSLVEEGLVAQETGTQQYHLGFEALQIGMAAMRQADPIRLAEASLVRLREALEV
HHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TCFVAVMGNKGPTIMRFEEPGLPVTVNVRAGSVMPLLWSATGRVFLGLLDEKRVHAQAEE
EEEEEEECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHCCCHHEEHHHHHHHHHHHHHH
ELAAASPARLALLDGKDPIGALRRAVQADDCAWVRDTNLTGISAVAAPVRDYTGRVCAVL
HHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH
TALGATGGFDPAIDGPIGSAVRREARAVSTALGFNPGA
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PRPKAAQPPIEPADAPRTRERRQRVQSAVTGMAVLKGLARLGGRASLTALAAHIDESPA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH
KVHRYLVSLVEEGLVAQETGTQQYHLGFEALQIGMAAMRQADPIRLAEASLVRLREALEV
HHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TCFVAVMGNKGPTIMRFEEPGLPVTVNVRAGSVMPLLWSATGRVFLGLLDEKRVHAQAEE
EEEEEEECCCCCEEEEEECCCCCEEEEECCCCCHHHHHHCCCHHEEHHHHHHHHHHHHHH
ELAAASPARLALLDGKDPIGALRRAVQADDCAWVRDTNLTGISAVAAPVRDYTGRVCAVL
HHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH
TALGATGGFDPAIDGPIGSAVRREARAVSTALGFNPGA
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA