Click here to switch to the map view.

The map label for this gene is ywbI [H]

Identifier: 116695220

GI number: 116695220

Start: 1433370

End: 1434275

Strand: Direct

Name: ywbI [H]

Synonym: H16_B1276

Alternate gene names: 116695220

Gene position: 1433370-1434275 (Clockwise)

Preceding gene: 116695212

Following gene: 116695222

Centisome position: 49.21

GC content: 69.43

Gene sequence:

>906_bases
ATGCCCATCGATATCCGCGCGCTGCGCTATTTCGTCGAGACTGCCCGGCTGCGCAGCTTTACCCAGGCCGCGGCCTCGCT
GTTCGTCACCCAGTCGACCATCAGCAAGATGGTCAAGCAGCTGGAGGACGAGGTCGGCCAGCCGCTGCTGATCCGTGAAG
GCAAGAGCGTGCGGCTGACCGACGTGGGCCGCGTGGTCTACGAGCGCGGGCAGGAGGCGCTGGGCGTGGTGCACCGGCTC
ACGCTGGAGGTGTCCGACCTGTCCTCGCTGGGCCGGGGGCAGCTGACCGTGGGGATCCCGCCGATGGTCAACCTGTTCTT
TTCACCGGCGGTCAGCGCGTTCCGGCAGCGCTATCCCAACCTGTCGCTGACGCTGGACGAGCACGGCGGCCAGGTGGTGG
AGCAGCTGGTGGCAAGCGGCGAGCTGGAGGTCGGCGCCACGGTGCTGCCGGGCGACAGTGGCCTGGCGCTGGAAACGCGC
CAGTTCGGCCGCTACCCGATCTGGGCCGTGGGGCCGCGCAAGGCCGCGTGGGCGCGCGGGCGCACCGTCACGCTGGCGGC
TCTGCGCGATGAGCCGCTGGTGATGCTGACAGATGACTTCTCGCTGACGCGCATGCTGCGGCAGGCGTTTCTGGAAGCAC
GCATCGAGCCGCGCGTGGTGGCGCGCAGCGGGCACTGGGATTTCCTGGCATCGATGGCGGCGGCGGGGCTGGGCACTACC
TTCCTGCCGCAGCCGCTGGCTGAGCGCCTGCAGGGCCAGGACACACTGGCCATGGCGCGGCTGACCGCGCCGGCAATGGA
CTGGACCATGGCGCATATCTGGTCGCCGGGACGTTACCTGTCGCATGCGGCGCGGGCATGGCTGGCGGTTTGCGAAGAGG
TGCTTGGGGGCGGAAAGGGATCTTGA

Upstream 100 bases:

>100_bases
ACCTTTCGCATTCCATTCATGATTTAATATTGGCCTTTCCATTCCCTTTGTTCATGGGTGGCGAAACCGGCCTGCCGGCG
GCCCGCCGTCCCTCAGCACC

Downstream 100 bases:

>100_bases
ACCGGCGCGCTTGCGGCGGCCTCATTTCTTCAGGCACTGGTCCGGCAGGATATCGAGCAAGACCAGCGATTTCTGCCCGG
CCACGTAGTGGTAGCGCAGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MPIDIRALRYFVETARLRSFTQAAASLFVTQSTISKMVKQLEDEVGQPLLIREGKSVRLTDVGRVVYERGQEALGVVHRL
TLEVSDLSSLGRGQLTVGIPPMVNLFFSPAVSAFRQRYPNLSLTLDEHGGQVVEQLVASGELEVGATVLPGDSGLALETR
QFGRYPIWAVGPRKAAWARGRTVTLAALRDEPLVMLTDDFSLTRMLRQAFLEARIEPRVVARSGHWDFLASMAAAGLGTT
FLPQPLAERLQGQDTLAMARLTAPAMDWTMAHIWSPGRYLSHAARAWLAVCEEVLGGGKGS

Sequences:

>Translated_301_residues
MPIDIRALRYFVETARLRSFTQAAASLFVTQSTISKMVKQLEDEVGQPLLIREGKSVRLTDVGRVVYERGQEALGVVHRL
TLEVSDLSSLGRGQLTVGIPPMVNLFFSPAVSAFRQRYPNLSLTLDEHGGQVVEQLVASGELEVGATVLPGDSGLALETR
QFGRYPIWAVGPRKAAWARGRTVTLAALRDEPLVMLTDDFSLTRMLRQAFLEARIEPRVVARSGHWDFLASMAAAGLGTT
FLPQPLAERLQGQDTLAMARLTAPAMDWTMAHIWSPGRYLSHAARAWLAVCEEVLGGGKGS
>Mature_300_residues
PIDIRALRYFVETARLRSFTQAAASLFVTQSTISKMVKQLEDEVGQPLLIREGKSVRLTDVGRVVYERGQEALGVVHRLT
LEVSDLSSLGRGQLTVGIPPMVNLFFSPAVSAFRQRYPNLSLTLDEHGGQVVEQLVASGELEVGATVLPGDSGLALETRQ
FGRYPIWAVGPRKAAWARGRTVTLAALRDEPLVMLTDDFSLTRMLRQAFLEARIEPRVVARSGHWDFLASMAAAGLGTTF
LPQPLAERLQGQDTLAMARLTAPAMDWTMAHIWSPGRYLSHAARAWLAVCEEVLGGGKGS

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=302, Percent_Identity=28.476821192053, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1788297, Length=265, Percent_Identity=26.7924528301887, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1790399, Length=295, Percent_Identity=29.1525423728814, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788887, Length=299, Percent_Identity=27.0903010033445, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=29.9319727891156, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787879, Length=256, Percent_Identity=28.90625, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI2367136, Length=246, Percent_Identity=22.7642276422764, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693105, Length=149, Percent_Identity=24.8322147651007, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=23.1075697211155, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693193, Length=126, Percent_Identity=30.952380952381, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789173, Length=122, Percent_Identity=33.6065573770492, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32953; Mature: 32822

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIDIRALRYFVETARLRSFTQAAASLFVTQSTISKMVKQLEDEVGQPLLIREGKSVRLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEH
DVGRVVYERGQEALGVVHRLTLEVSDLSSLGRGQLTVGIPPMVNLFFSPAVSAFRQRYPN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCC
LSLTLDEHGGQVVEQLVASGELEVGATVLPGDSGLALETRQFGRYPIWAVGPRKAAWARG
CEEEECCCCHHHHHHHHHCCCCCCCCEEECCCCCCEEEHHHCCCCCEEEECCCHHHHHCC
RTVTLAALRDEPLVMLTDDFSLTRMLRQAFLEARIEPRVVARSGHWDFLASMAAAGLGTT
CEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCC
FLPQPLAERLQGQDTLAMARLTAPAMDWTMAHIWSPGRYLSHAARAWLAVCEEVLGGGKG
CCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
S
C
>Mature Secondary Structure 
PIDIRALRYFVETARLRSFTQAAASLFVTQSTISKMVKQLEDEVGQPLLIREGKSVRLT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEH
DVGRVVYERGQEALGVVHRLTLEVSDLSSLGRGQLTVGIPPMVNLFFSPAVSAFRQRYPN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCC
LSLTLDEHGGQVVEQLVASGELEVGATVLPGDSGLALETRQFGRYPIWAVGPRKAAWARG
CEEEECCCCHHHHHHHHHCCCCCCCCEEECCCCCCEEEHHHCCCCCEEEECCCHHHHHCC
RTVTLAALRDEPLVMLTDDFSLTRMLRQAFLEARIEPRVVARSGHWDFLASMAAAGLGTT
CEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCC
FLPQPLAERLQGQDTLAMARLTAPAMDWTMAHIWSPGRYLSHAARAWLAVCEEVLGGGKG
CCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]