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The map label for this gene is ybhD [H]

Identifier: 116695212

GI number: 116695212

Start: 1426380

End: 1427264

Strand: Direct

Name: ybhD [H]

Synonym: H16_B1268

Alternate gene names: 116695212

Gene position: 1426380-1427264 (Clockwise)

Preceding gene: 116695210

Following gene: 116695220

Centisome position: 48.97

GC content: 70.17

Gene sequence:

>885_bases
ATGATCCGCTACTTCCAGACCTTCCTGGTGGCCGCCGAAACCGGCTCGTTCTCCGCCGCCGCGGCGCGGCTGGCGCTGAC
GCAGTCGGCCGTCAGCACGCAGATCCGGCGGCTGGAAGAGGACCTGGACTGCGTACTCTTCGATCGCACCGGCAAGTCGG
TCGCGCTCAGCGAAGCCGGGCGCCGGTTGGTGCCGGAAGCGCGGCGCTTTGTCGAGCTCTATGCCGCGATGAAGGACCGC
GCCGGCCCGCATGCCGACGCCGCGCCGGTGGAGCTGGGCGCGGTGTCGACGGTCCAGGCCACCTTGCTGGCCGATGCGAT
GCGGCATTTCCGGGGGCGGTTTCCCGACTCGCACGTCAACGTGGTGCCGGGCATGTCCACCCAGCTGCTGACGCAGGTGG
ATGCGCGCGAGCTGGACATCGCCGTGCTGATCCGGCCGCGGCTGGGCTTTCCGCCGGACCTCAAGTGGGTGCCGCTGGTG
CGCGAGGGCTTTGTCGGCATCGGGCCCGCCGGTGCGCCTGCAGACCTGCGCGCGTTGCTGGAGACGCTTCCGTTCATTCG
CTACAACCGCCACAGCACCGGCGGGCAGCTGGTGGACGGCTACCTGAAGCGGCAGCGGCTATGGGTCAGGGAAGGGATGG
AGCTGGATGAGCCGGCCGTGATCCTGCTGATGGTGGCAGCTGGCCTGGGTTGCGCCATCATCCCGTCCGGACTGGTGCCG
TTGCAGCAGTCCGCGGGCGTGGTGCAGGCGCCATTGCCGGGCGGGCCGCTCTATCGCGACGTGGGCGTGCTGGTGCGCGA
ATCGGCACTGCGCCGCGCGCCGGTGGCGGCGCTGATCGATGCCTTTGTGGCTGCCAGCGCGCGCTGGCAGTCTGCCGTGG
TGTAA

Upstream 100 bases:

>100_bases
CGTTATGCGGGCAGGCGTTGGCCTGCGCGTTGATTGTAGCCAGCACAACCCGTAATATGAAGCGAATCATTTTTGGCCTG
AGTATCAGAATTTTCAATAG

Downstream 100 bases:

>100_bases
AGGCGCGATACTCAGCGGCTGCCGGGCAGGACCAACGTGACCAGCACCGAGGCATCGGAGATGGCGGTCACGTCGTAGCG
CACGCTCGGCCCCAGGTAGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MIRYFQTFLVAAETGSFSAAAARLALTQSAVSTQIRRLEEDLDCVLFDRTGKSVALSEAGRRLVPEARRFVELYAAMKDR
AGPHADAAPVELGAVSTVQATLLADAMRHFRGRFPDSHVNVVPGMSTQLLTQVDARELDIAVLIRPRLGFPPDLKWVPLV
REGFVGIGPAGAPADLRALLETLPFIRYNRHSTGGQLVDGYLKRQRLWVREGMELDEPAVILLMVAAGLGCAIIPSGLVP
LQQSAGVVQAPLPGGPLYRDVGVLVRESALRRAPVAALIDAFVAASARWQSAVV

Sequences:

>Translated_294_residues
MIRYFQTFLVAAETGSFSAAAARLALTQSAVSTQIRRLEEDLDCVLFDRTGKSVALSEAGRRLVPEARRFVELYAAMKDR
AGPHADAAPVELGAVSTVQATLLADAMRHFRGRFPDSHVNVVPGMSTQLLTQVDARELDIAVLIRPRLGFPPDLKWVPLV
REGFVGIGPAGAPADLRALLETLPFIRYNRHSTGGQLVDGYLKRQRLWVREGMELDEPAVILLMVAAGLGCAIIPSGLVP
LQQSAGVVQAPLPGGPLYRDVGVLVRESALRRAPVAALIDAFVAASARWQSAVV
>Mature_294_residues
MIRYFQTFLVAAETGSFSAAAARLALTQSAVSTQIRRLEEDLDCVLFDRTGKSVALSEAGRRLVPEARRFVELYAAMKDR
AGPHADAAPVELGAVSTVQATLLADAMRHFRGRFPDSHVNVVPGMSTQLLTQVDARELDIAVLIRPRLGFPPDLKWVPLV
REGFVGIGPAGAPADLRALLETLPFIRYNRHSTGGQLVDGYLKRQRLWVREGMELDEPAVILLMVAAGLGCAIIPSGLVP
LQQSAGVVQAPLPGGPLYRDVGVLVRESALRRAPVAALIDAFVAASARWQSAVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=274, Percent_Identity=27.7372262773723, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787879, Length=253, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=255, Percent_Identity=25.8823529411765, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790399, Length=306, Percent_Identity=26.4705882352941, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=165, Percent_Identity=31.5151515151515, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=173, Percent_Identity=27.7456647398844, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=259, Percent_Identity=27.7992277992278, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=265, Percent_Identity=27.1698113207547, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082132, Length=259, Percent_Identity=24.7104247104247, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31692; Mature: 31692

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRYFQTFLVAAETGSFSAAAARLALTQSAVSTQIRRLEEDLDCVLFDRTGKSVALSEAG
CHHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEHHHHC
RRLVPEARRFVELYAAMKDRAGPHADAAPVELGAVSTVQATLLADAMRHFRGRFPDSHVN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCEE
VVPGMSTQLLTQVDARELDIAVLIRPRLGFPPDLKWVPLVREGFVGIGPAGAPADLRALL
ECCCCHHHHHHHHCHHHCCEEEEEECCCCCCCCCCCCCHHHCCCEECCCCCCCHHHHHHH
ETLPFIRYNRHSTGGQLVDGYLKRQRLWVREGMELDEPAVILLMVAAGLGCAIIPSGLVP
HHCCHHEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEECCCCCCC
LQQSAGVVQAPLPGGPLYRDVGVLVRESALRRAPVAALIDAFVAASARWQSAVV
HHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRYFQTFLVAAETGSFSAAAARLALTQSAVSTQIRRLEEDLDCVLFDRTGKSVALSEAG
CHHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEHHHHC
RRLVPEARRFVELYAAMKDRAGPHADAAPVELGAVSTVQATLLADAMRHFRGRFPDSHVN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCEE
VVPGMSTQLLTQVDARELDIAVLIRPRLGFPPDLKWVPLVREGFVGIGPAGAPADLRALL
ECCCCHHHHHHHHCHHHCCEEEEEECCCCCCCCCCCCCHHHCCCEECCCCCCCHHHHHHH
ETLPFIRYNRHSTGGQLVDGYLKRQRLWVREGMELDEPAVILLMVAAGLGCAIIPSGLVP
HHCCHHEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEECCCCCCC
LQQSAGVVQAPLPGGPLYRDVGVLVRESALRRAPVAALIDAFVAASARWQSAVV
HHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]