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The map label for this gene is nahR [H]

Identifier: 116694942

GI number: 116694942

Start: 1122963

End: 1123907

Strand: Direct

Name: nahR [H]

Synonym: H16_B0997

Alternate gene names: 116694942

Gene position: 1122963-1123907 (Clockwise)

Preceding gene: 116694938

Following gene: 116694943

Centisome position: 38.56

GC content: 69.1

Gene sequence:

>945_bases
ATGATTCGCGCCGACGACCCGTTCGATACCTACCTGCTGCGCGTGCTGTGCATCCTGATCGCCGAGCAGAGCGTGTCGCG
CACCGCGATCCGCCTGAACCAGTCGCAGCCGGCCATCAGCGCCGCGCTCAAGCGCCTGCGCGCGATCTTCAACGACCCGC
TGCTCACGCGCGAGAAGAACGTGATGGTGCCGACCGAGCGCGCGCTGCAGCTGGCGCGCAATGCCCAGGCCGCGCTCAGC
GCGCTGGACAACCTGCTGGTCTCGGACGAGCGCTTCGATCCCGCCACCACCGAGCAGAGCTTCGTGGTGGCCATGCCTGA
TTACCTGGCGCCGCCGTTCTTCGCGCACGTGGTGCGCGCGGTGCGGCGTGCGGCGCCGCACGCGCGGCTGTCGGCGCTGC
CGCTGGGGGCCACCTTCGATTACGAGCAGGCGCTGTCGGCGGGTACGGTCGACATCGTGATCGGCAACTGGCCCAACCCG
CCTGAGCACCTGCATCTGTCGGTGCTGCTGGAAGACGAGGTGGTGTGCGTGGTGGCGCAGGACAGCGTGCATGCGCAGCC
CGGCAAGTTTACGGCCCAGGCCTACCTGGGCGCCTCGCATATCGTGCCCACGCCATATTCGCGCGACCAGCGCGGCCTGG
TCGATGCCGGCCTGAGCACCATGCGCGTGCACCGGGACAACCGCGTCAGCTGTCCCTACTTCAACCTGGCGCCCAGCCTG
ATCCCGGGCACCGACCTGATCCTGACCACCGCGCGCCATTTCGCCAACTACCATGCGCAGCATGTGCCGCTTGCGGTGCT
GGAGCCGCCGATCGAGTTCCCGTTCATGCGCTTCTACCAGCTGTGGCACCCGTCGCGCCACCGCTCGGCCGCGCACGTCT
GGCTGCGCGGCATGCTGACCGCCGCCTCGCAGGAGCTGCGCGACCTGCGCGATATGCGCCGCTAG

Upstream 100 bases:

>100_bases
CGACACGCTACAAAGTCGCCATTGCCTGGCATGGCGTTGCCGCCCGGAGCGGCGGCGGCCGCACCCGCCAGGCCTCCACT
TTTGCTGCCACGGACCCAAC

Downstream 100 bases:

>100_bases
CGGTATCGGTTTCTGTTATGGGATCTATAGGGCGCGGGCTCTCGCCGCTGCGGCGGGCCGTTCCTATACTCGGCCCCGTA
TCCAATGATTCCCCATGCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MIRADDPFDTYLLRVLCILIAEQSVSRTAIRLNQSQPAISAALKRLRAIFNDPLLTREKNVMVPTERALQLARNAQAALS
ALDNLLVSDERFDPATTEQSFVVAMPDYLAPPFFAHVVRAVRRAAPHARLSALPLGATFDYEQALSAGTVDIVIGNWPNP
PEHLHLSVLLEDEVVCVVAQDSVHAQPGKFTAQAYLGASHIVPTPYSRDQRGLVDAGLSTMRVHRDNRVSCPYFNLAPSL
IPGTDLILTTARHFANYHAQHVPLAVLEPPIEFPFMRFYQLWHPSRHRSAAHVWLRGMLTAASQELRDLRDMRR

Sequences:

>Translated_314_residues
MIRADDPFDTYLLRVLCILIAEQSVSRTAIRLNQSQPAISAALKRLRAIFNDPLLTREKNVMVPTERALQLARNAQAALS
ALDNLLVSDERFDPATTEQSFVVAMPDYLAPPFFAHVVRAVRRAAPHARLSALPLGATFDYEQALSAGTVDIVIGNWPNP
PEHLHLSVLLEDEVVCVVAQDSVHAQPGKFTAQAYLGASHIVPTPYSRDQRGLVDAGLSTMRVHRDNRVSCPYFNLAPSL
IPGTDLILTTARHFANYHAQHVPLAVLEPPIEFPFMRFYQLWHPSRHRSAAHVWLRGMLTAASQELRDLRDMRR
>Mature_314_residues
MIRADDPFDTYLLRVLCILIAEQSVSRTAIRLNQSQPAISAALKRLRAIFNDPLLTREKNVMVPTERALQLARNAQAALS
ALDNLLVSDERFDPATTEQSFVVAMPDYLAPPFFAHVVRAVRRAAPHARLSALPLGATFDYEQALSAGTVDIVIGNWPNP
PEHLHLSVLLEDEVVCVVAQDSVHAQPGKFTAQAYLGASHIVPTPYSRDQRGLVDAGLSTMRVHRDNRVSCPYFNLAPSL
IPGTDLILTTARHFANYHAQHVPLAVLEPPIEFPFMRFYQLWHPSRHRSAAHVWLRGMLTAASQELRDLRDMRR

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=303, Percent_Identity=25.0825082508251, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35115; Mature: 35115

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRADDPFDTYLLRVLCILIAEQSVSRTAIRLNQSQPAISAALKRLRAIFNDPLLTREKN
CCCCCCCHHHHHHHHHHHHHHHCCHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
VMVPTERALQLARNAQAALSALDNLLVSDERFDPATTEQSFVVAMPDYLAPPFFAHVVRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHCCHHHHHHHHH
VRRAAPHARLSALPLGATFDYEQALSAGTVDIVIGNWPNPPEHLHLSVLLEDEVVCVVAQ
HHHHCCCCHHHEECCCCCCCHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCEEEEEEC
DSVHAQPGKFTAQAYLGASHIVPTPYSRDQRGLVDAGLSTMRVHRDNRVSCPYFNLAPSL
CCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHHCCHHEEEECCCCCCCCCCCCCCCC
IPGTDLILTTARHFANYHAQHVPLAVLEPPIEFPFMRFYQLWHPSRHRSAAHVWLRGMLT
CCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
AASQELRDLRDMRR
HHHHHHHHHHHHCC
>Mature Secondary Structure
MIRADDPFDTYLLRVLCILIAEQSVSRTAIRLNQSQPAISAALKRLRAIFNDPLLTREKN
CCCCCCCHHHHHHHHHHHHHHHCCHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
VMVPTERALQLARNAQAALSALDNLLVSDERFDPATTEQSFVVAMPDYLAPPFFAHVVRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHCCHHHHHHHHH
VRRAAPHARLSALPLGATFDYEQALSAGTVDIVIGNWPNPPEHLHLSVLLEDEVVCVVAQ
HHHHCCCCHHHEECCCCCCCHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCEEEEEEC
DSVHAQPGKFTAQAYLGASHIVPTPYSRDQRGLVDAGLSTMRVHRDNRVSCPYFNLAPSL
CCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHHCCHHEEEECCCCCCCCCCCCCCCC
IPGTDLILTTARHFANYHAQHVPLAVLEPPIEFPFMRFYQLWHPSRHRSAAHVWLRGMLT
CCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH
AASQELRDLRDMRR
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]