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The map label for this gene is ccmF2 [H]

Identifier: 116694901

GI number: 116694901

Start: 1077355

End: 1079325

Strand: Direct

Name: ccmF2 [H]

Synonym: H16_B0956

Alternate gene names: 116694901

Gene position: 1077355-1079325 (Clockwise)

Preceding gene: 116694900

Following gene: 116694902

Centisome position: 36.99

GC content: 65.25

Gene sequence:

>1971_bases
ATGATTCCCGAACTCGGTCAATGGTGCCTGGCGCTTGCGCTCGCGCTGGCGCTGTCGCAAGCGGCGCTGCCGCTCCTGGG
GGCGGTGCGCGGCGTCGATGGCTGGATGCGCACCGCACATGCCGCAGCACGCATGCAGTTCCTGTTTCTCTCGCTGGCCT
TTGTTTTCCTGTCGGCGGCGCTGCTGGGGAACGATTTTTCGGTGCGCTATGTCGCAAACCACTCAAACAGCAGCCTGCCG
GCGATCTATCGCTTTGCCGCCGCCTGGGGCGGCCATGAGGGATCGTTGCTGCTTTGGTCACTACTGCTGGCAGCCTGGTC
GGCCCTGGTGAGCTGGCGCAGCGACAGCCTGCCGCTGATGTTCTCGTCACGCGTGCTGGCCGTCCTGGGCATCGTGTCGA
GCGGCTTCCTTTGCTTCATGCTGTTCACCTCGAATCCTTTCGAGCGCCTGTGGCCGGCGCCCCCGGACGGCGGTGACCTC
AACCCACTGTTGCAGGACATCGGGCTGGTGATCCACCCGCCGATGCTGTATATCGGCTATGTCGGACTGGCGGTGCCCTT
CGCGTTCTCGGTGGCCTCCCTTCTGACCGGGCGCATCGATTCACTCTGGGCACGCTGGTGCCGGCCATGGACCATCGGCG
CCTGGCTGTTCCTGACACTCGGCATCGCCCTTGGCAGTGCCTGGGCCTACTACGAACTGGGTTGGGGCGGCTGGTGGTTC
TGGGATCCGGTCGAGAATGCTTCCTTCATGCCATGGCTGCTTGCCACCGCGCTCATGCATTCGCTGGCGGTCACGGAAAA
GCGGGGCATATTCGCCGGCTGGACCCTGTTGCTGGCGATCGCCGCCTTTGGCCTGAGTTTGCTGGGCGCCTTTCTGGTGC
GCTCCGGCGTGCTGACCTCCGTGCATGCCTTTGCCGCGGATCCGGGGCGCGGCGTGTTCCTGCTGTCATTGTTCGCATTC
ATCGTCGGCGGCGCACTCTGTTTGTACGCGTGGCGCATGGGGCGCGTGCGGAGCAGTTCGGCGTTCGCGCCGTTCTCGCG
CGAGGGGGTGCTGATGCTGAACAATCTGTTCCTGGCCGTAGCAACCGCGTCTGTTTTGCTGGGCACAGTCTATCCGCTGG
CGCTCGATAGCCTGGGCCTGGCGAAGATATCAGTCGGTGCGCCGTATTTCGAGGCGGTGTTTGTGCCGCTGGTCGTGCCA
ATGCTGTTTCTGATGGGCGTGGGCCCGCTGATGCGCTGGAAGCATGCTTCGCTGCCGGATCTGAAGCGTCGGCTGAAATG
GGCGCTGGCCGCGGCGCTTGCCTTTGGCCTGGTCACGCCCTGGCTGCTAGGCACATCGAGCATCGGCATCAGCCTCGGCC
TGGCCCTGGCCGGCTGGATCACCTGTGCTCTGGTCGCGACCGCGGCCGAGAGCGTGCGCGACCGGCGCGGGGCAGGAGCG
TTGCGCAGTCTGGCCGCCCGTCCGCTGTCGTTCCACGGCATGTTGATCGCGCACCTTGGCATTGCAGTGTGCATTGTCGG
GGTCACCATGGTCGGCGGCTATGCAGGCGAACGCACGGTGAGCATGTCGGTCGGCGACTCGCTCGAGTTCCGCGACTACC
GCTTCCGCTTCGACTCGGTGGAAACACTGGCGCGCGACAACTACCAGGCCCGGCGCGCGAGCATTACGGTGACGCGAGAC
GGCCAGCTGGTGACATTGCTGCGGCCAGAGAAGCGCTTCTATCCGGTTCAGCGCAAGGTGATGACCGAGGCGGCGATCGA
TCCCGGCCTGACGCGTGACCTCTATGTATCGCTTGGCGAAGCGTTGCCCGACGGTAGCTGGACTTTGCGGCTTTACCACA
AGCCGTTCATAAGCTGGATCTGGTCCGGCTGCCTGCTGATGGCATTTGGCGGCTTGCTTGCGCTCGGCGACCGCCGCTAT
CGGGCGCGCATCGCGCCGGCCGCCACGCCGCTGAACCTGGGGGTGGAGTGA

Upstream 100 bases:

>100_bases
CGGCCGAGGAGGTGCTGGCCAAGCATGATGAAGTGTACATGCCGCCGGAGGTCGCCGCTTCGCTCAAGCTCGCCGAAGCG
GCGCAGAAAGGTGGGGCCAG

Downstream 100 bases:

>100_bases
TGCGACGGTTTGTTCCTGCTGCGATCTTCATCATGCTCTTGCTGCTGCTCGGCCTCGGGCTTGCGCCGAGACCAAGCAGT
CCGCCATCCCCCCTGATCGG

Product: cytochrome c biogenesis factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 656; Mature: 656

Protein sequence:

>656_residues
MIPELGQWCLALALALALSQAALPLLGAVRGVDGWMRTAHAAARMQFLFLSLAFVFLSAALLGNDFSVRYVANHSNSSLP
AIYRFAAAWGGHEGSLLLWSLLLAAWSALVSWRSDSLPLMFSSRVLAVLGIVSSGFLCFMLFTSNPFERLWPAPPDGGDL
NPLLQDIGLVIHPPMLYIGYVGLAVPFAFSVASLLTGRIDSLWARWCRPWTIGAWLFLTLGIALGSAWAYYELGWGGWWF
WDPVENASFMPWLLATALMHSLAVTEKRGIFAGWTLLLAIAAFGLSLLGAFLVRSGVLTSVHAFAADPGRGVFLLSLFAF
IVGGALCLYAWRMGRVRSSSAFAPFSREGVLMLNNLFLAVATASVLLGTVYPLALDSLGLAKISVGAPYFEAVFVPLVVP
MLFLMGVGPLMRWKHASLPDLKRRLKWALAAALAFGLVTPWLLGTSSIGISLGLALAGWITCALVATAAESVRDRRGAGA
LRSLAARPLSFHGMLIAHLGIAVCIVGVTMVGGYAGERTVSMSVGDSLEFRDYRFRFDSVETLARDNYQARRASITVTRD
GQLVTLLRPEKRFYPVQRKVMTEAAIDPGLTRDLYVSLGEALPDGSWTLRLYHKPFISWIWSGCLLMAFGGLLALGDRRY
RARIAPAATPLNLGVE

Sequences:

>Translated_656_residues
MIPELGQWCLALALALALSQAALPLLGAVRGVDGWMRTAHAAARMQFLFLSLAFVFLSAALLGNDFSVRYVANHSNSSLP
AIYRFAAAWGGHEGSLLLWSLLLAAWSALVSWRSDSLPLMFSSRVLAVLGIVSSGFLCFMLFTSNPFERLWPAPPDGGDL
NPLLQDIGLVIHPPMLYIGYVGLAVPFAFSVASLLTGRIDSLWARWCRPWTIGAWLFLTLGIALGSAWAYYELGWGGWWF
WDPVENASFMPWLLATALMHSLAVTEKRGIFAGWTLLLAIAAFGLSLLGAFLVRSGVLTSVHAFAADPGRGVFLLSLFAF
IVGGALCLYAWRMGRVRSSSAFAPFSREGVLMLNNLFLAVATASVLLGTVYPLALDSLGLAKISVGAPYFEAVFVPLVVP
MLFLMGVGPLMRWKHASLPDLKRRLKWALAAALAFGLVTPWLLGTSSIGISLGLALAGWITCALVATAAESVRDRRGAGA
LRSLAARPLSFHGMLIAHLGIAVCIVGVTMVGGYAGERTVSMSVGDSLEFRDYRFRFDSVETLARDNYQARRASITVTRD
GQLVTLLRPEKRFYPVQRKVMTEAAIDPGLTRDLYVSLGEALPDGSWTLRLYHKPFISWIWSGCLLMAFGGLLALGDRRY
RARIAPAATPLNLGVE
>Mature_656_residues
MIPELGQWCLALALALALSQAALPLLGAVRGVDGWMRTAHAAARMQFLFLSLAFVFLSAALLGNDFSVRYVANHSNSSLP
AIYRFAAAWGGHEGSLLLWSLLLAAWSALVSWRSDSLPLMFSSRVLAVLGIVSSGFLCFMLFTSNPFERLWPAPPDGGDL
NPLLQDIGLVIHPPMLYIGYVGLAVPFAFSVASLLTGRIDSLWARWCRPWTIGAWLFLTLGIALGSAWAYYELGWGGWWF
WDPVENASFMPWLLATALMHSLAVTEKRGIFAGWTLLLAIAAFGLSLLGAFLVRSGVLTSVHAFAADPGRGVFLLSLFAF
IVGGALCLYAWRMGRVRSSSAFAPFSREGVLMLNNLFLAVATASVLLGTVYPLALDSLGLAKISVGAPYFEAVFVPLVVP
MLFLMGVGPLMRWKHASLPDLKRRLKWALAAALAFGLVTPWLLGTSSIGISLGLALAGWITCALVATAAESVRDRRGAGA
LRSLAARPLSFHGMLIAHLGIAVCIVGVTMVGGYAGERTVSMSVGDSLEFRDYRFRFDSVETLARDNYQARRASITVTRD
GQLVTLLRPEKRFYPVQRKVMTEAAIDPGLTRDLYVSLGEALPDGSWTLRLYHKPFISWIWSGCLLMAFGGLLALGDRRY
RARIAPAATPLNLGVE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=651, Percent_Identity=52.9953917050691, Blast_Score=624, Evalue=1e-180,
Organism=Escherichia coli, GI1790511, Length=580, Percent_Identity=39.6551724137931, Blast_Score=297, Evalue=1e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71197; Mature: 71197

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGQWCLALALALALSQAALPLLGAVRGVDGWMRTAHAAARMQFLFLSLAFVFLSAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGNDFSVRYVANHSNSSLPAIYRFAAAWGGHEGSLLLWSLLLAAWSALVSWRSDSLPLM
HHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
FSSRVLAVLGIVSSGFLCFMLFTSNPFERLWPAPPDGGDLNPLLQDIGLVIHPPMLYIGY
HHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCHHHHHCCHHCCCHHHHHHH
VGLAVPFAFSVASLLTGRIDSLWARWCRPWTIGAWLFLTLGIALGSAWAYYELGWGGWWF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
WDPVENASFMPWLLATALMHSLAVTEKRGIFAGWTLLLAIAAFGLSLLGAFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAADPGRGVFLLSLFAFIVGGALCLYAWRMGRVRSSSAFAPFSREGVLMLNNLFLAV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
ATASVLLGTVYPLALDSLGLAKISVGAPYFEAVFVPLVVPMLFLMGVGPLMRWKHASLPD
HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHH
LKRRLKWALAAALAFGLVTPWLLGTSSIGISLGLALAGWITCALVATAAESVRDRRGAGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LRSLAARPLSFHGMLIAHLGIAVCIVGVTMVGGYAGERTVSMSVGDSLEFRDYRFRFDSV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHEEHHHH
ETLARDNYQARRASITVTRDGQLVTLLRPEKRFYPVQRKVMTEAAIDPGLTRDLYVSLGE
HHHHHCCCHHHHEEEEEECCCCEEEEECCCHHCCHHHHHHHHHHHCCCCCCHHHHHHHHH
ALPDGSWTLRLYHKPFISWIWSGCLLMAFGGLLALGDRRYRARIAPAATPLNLGVE
HCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCC
>Mature Secondary Structure
MIPELGQWCLALALALALSQAALPLLGAVRGVDGWMRTAHAAARMQFLFLSLAFVFLSAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGNDFSVRYVANHSNSSLPAIYRFAAAWGGHEGSLLLWSLLLAAWSALVSWRSDSLPLM
HHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
FSSRVLAVLGIVSSGFLCFMLFTSNPFERLWPAPPDGGDLNPLLQDIGLVIHPPMLYIGY
HHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCHHHHHCCHHCCCHHHHHHH
VGLAVPFAFSVASLLTGRIDSLWARWCRPWTIGAWLFLTLGIALGSAWAYYELGWGGWWF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
WDPVENASFMPWLLATALMHSLAVTEKRGIFAGWTLLLAIAAFGLSLLGAFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAADPGRGVFLLSLFAFIVGGALCLYAWRMGRVRSSSAFAPFSREGVLMLNNLFLAV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
ATASVLLGTVYPLALDSLGLAKISVGAPYFEAVFVPLVVPMLFLMGVGPLMRWKHASLPD
HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHH
LKRRLKWALAAALAFGLVTPWLLGTSSIGISLGLALAGWITCALVATAAESVRDRRGAGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LRSLAARPLSFHGMLIAHLGIAVCIVGVTMVGGYAGERTVSMSVGDSLEFRDYRFRFDSV
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHEEHHHH
ETLARDNYQARRASITVTRDGQLVTLLRPEKRFYPVQRKVMTEAAIDPGLTRDLYVSLGE
HHHHHCCCHHHHEEEEEECCCCEEEEECCCHHCCHHHHHHHHHHHCCCCCCHHHHHHHHH
ALPDGSWTLRLYHKPFISWIWSGCLLMAFGGLLALGDRRYRARIAPAATPLNLGVE
HCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]