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The map label for this gene is mmgC [H]

Identifier: 116694796

GI number: 116694796

Start: 963920

End: 965023

Strand: Direct

Name: mmgC [H]

Synonym: H16_B0850

Alternate gene names: 116694796

Gene position: 963920-965023 (Clockwise)

Preceding gene: 116694795

Following gene: 116694797

Centisome position: 33.1

GC content: 72.55

Gene sequence:

>1104_bases
GTGCGGCGCTATGTCGAACGCGGCTACGGCTTCGAGCAGCGCCGCGCGGCGCTGGCCGAGCCCGATGGCTTCTCGCGCAA
GCACTGGCAGGCGTTTGCCGAAATGGGCTGGCTGGCCGTGGGGCTGCCCGAAGCCTGCGGCGGCCTGGGCGATGCCGCGG
ACCAGGCCCTGCTGGCCGAGGAACTGGGCCGCGCCCAGCCTGCCGAGCCCTGGCTGGCCAATGCCGCGCTGTGCGCGCCG
CTGCTGGCCGCCTGCGGCGATCCCGCCCACGCCGCGATCGCGGCGGCGATGGCCGAGGGTGGCGCGATGCTGGCGCTGGC
CGCATGGGAAACGCAGGGACGCTATGACGCCTTCGATATCAGCACCACCGCGCAACAGCATGAGCCGGGGCAATGGACGC
TGGACGGCCGCAAGACCCTGGTGCTGGGCGGCGGCAGCGCCGCGGTGCTGCTGGTGCTGGCGCGTAGCGGCGGCCAGCGC
CGCGACCGCGACGGCCTGACACTGTTCGCGGTGCCGGCCGACATGCGCGGCATCAGCGTCGATGCGCTGCCGACCTACGA
CGGCCGCCAGACCGCCAGCGTGACGCTGCGCCGCGCGACCGTGCCGGACAGCGCGCGCATCGGCCCGGTGGACGGCGCCT
GGCCGCTGGTGGAAGCCGCCATCGACCAGGCCACGGTGATGGCCTGCGCCGAAGCCGTGGGCACCATGTCGCGCGCGTTC
GACCTGACCCGCGACTACCTGGTGACGCGCGAGCAGTTCGGCCGCGCGCTGACGGCCAACCAGGTGATCCGGCACCGGCT
GGTGGACCTCTATGTCAGCGTCGAGCAGGCACGCGCCATCACCGAGCTGGCGGCCAACGCCCTGCATGGCGATGCGGTGG
CGCGCATGCGCGCGGTATCCCATGCCAAGGCCTTTGTCTCGGATGCCGGGCGCGCGCTCGGCGAAGACGTGGTGCAGCTG
CACGGTGCGGTGGGCATGACCGACGAGATGGAAATCGGCCACTGCTACAAGCGCCTGGCAGCCCACGCCAACCTGTTCGG
CGATGCCGACTGGCACTACGAACGGCTGGCGGCACTCGATCACGCGGCGCAGGCGCAAGCCTGA

Upstream 100 bases:

>100_bases
TGCTGGGCCTGTAGTGGCTCCAATCGTGCCCGCAACCCAGGACAAGGAACTGAACACATGAGCGATCCAACGGACGATCG
CCGCATGCTGCAGGAAAAGC

Downstream 100 bases:

>100_bases
GCCGGTTCAGCCAGGGCGCCCGGGCCGCTGCCCGGTGCGCCCACCCATGACACGCCGGCAACGCACCGGCATGCGCGGCC
AATGCGCCGCAACGGAGACA

Product: Acyl-CoA dehydrogenase, short-chain specific

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MRRYVERGYGFEQRRAALAEPDGFSRKHWQAFAEMGWLAVGLPEACGGLGDAADQALLAEELGRAQPAEPWLANAALCAP
LLAACGDPAHAAIAAAMAEGGAMLALAAWETQGRYDAFDISTTAQQHEPGQWTLDGRKTLVLGGGSAAVLLVLARSGGQR
RDRDGLTLFAVPADMRGISVDALPTYDGRQTASVTLRRATVPDSARIGPVDGAWPLVEAAIDQATVMACAEAVGTMSRAF
DLTRDYLVTREQFGRALTANQVIRHRLVDLYVSVEQARAITELAANALHGDAVARMRAVSHAKAFVSDAGRALGEDVVQL
HGAVGMTDEMEIGHCYKRLAAHANLFGDADWHYERLAALDHAAQAQA

Sequences:

>Translated_367_residues
MRRYVERGYGFEQRRAALAEPDGFSRKHWQAFAEMGWLAVGLPEACGGLGDAADQALLAEELGRAQPAEPWLANAALCAP
LLAACGDPAHAAIAAAMAEGGAMLALAAWETQGRYDAFDISTTAQQHEPGQWTLDGRKTLVLGGGSAAVLLVLARSGGQR
RDRDGLTLFAVPADMRGISVDALPTYDGRQTASVTLRRATVPDSARIGPVDGAWPLVEAAIDQATVMACAEAVGTMSRAF
DLTRDYLVTREQFGRALTANQVIRHRLVDLYVSVEQARAITELAANALHGDAVARMRAVSHAKAFVSDAGRALGEDVVQL
HGAVGMTDEMEIGHCYKRLAAHANLFGDADWHYERLAALDHAAQAQA
>Mature_367_residues
MRRYVERGYGFEQRRAALAEPDGFSRKHWQAFAEMGWLAVGLPEACGGLGDAADQALLAEELGRAQPAEPWLANAALCAP
LLAACGDPAHAAIAAAMAEGGAMLALAAWETQGRYDAFDISTTAQQHEPGQWTLDGRKTLVLGGGSAAVLLVLARSGGQR
RDRDGLTLFAVPADMRGISVDALPTYDGRQTASVTLRRATVPDSARIGPVDGAWPLVEAAIDQATVMACAEAVGTMSRAF
DLTRDYLVTREQFGRALTANQVIRHRLVDLYVSVEQARAITELAANALHGDAVARMRAVSHAKAFVSDAGRALGEDVVQL
HGAVGMTDEMEIGHCYKRLAAHANLFGDADWHYERLAALDHAAQAQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557231, Length=322, Percent_Identity=28.8819875776398, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI187960098, Length=322, Percent_Identity=28.8819875776398, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI4501857, Length=321, Percent_Identity=24.2990654205607, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI4557233, Length=311, Percent_Identity=25.7234726688103, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI7656849, Length=238, Percent_Identity=24.3697478991597, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI87081958, Length=320, Percent_Identity=22.8125, Blast_Score=71, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17508101, Length=349, Percent_Identity=25.214899713467, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17506239, Length=340, Percent_Identity=23.2352941176471, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17570075, Length=302, Percent_Identity=24.5033112582781, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17538396, Length=330, Percent_Identity=23.030303030303, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17534899, Length=310, Percent_Identity=24.8387096774194, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17569725, Length=310, Percent_Identity=24.8387096774194, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71990804, Length=285, Percent_Identity=24.2105263157895, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21356377, Length=315, Percent_Identity=24.1269841269841, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21355753, Length=339, Percent_Identity=23.8938053097345, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24666513, Length=334, Percent_Identity=22.7544910179641, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 39094; Mature: 39094

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRYVERGYGFEQRRAALAEPDGFSRKHWQAFAEMGWLAVGLPEACGGLGDAADQALLAE
CCCHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCEEEECCHHHHCCCCHHHHHHHHHH
ELGRAQPAEPWLANAALCAPLLAACGDPAHAAIAAAMAEGGAMLALAAWETQGRYDAFDI
HHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEC
STTAQQHEPGQWTLDGRKTLVLGGGSAAVLLVLARSGGQRRDRDGLTLFAVPADMRGISV
CCCHHCCCCCCEEECCCEEEEEECCCHHEEEEEECCCCCCCCCCCCEEEEECCCCCCCEE
DALPTYDGRQTASVTLRRATVPDSARIGPVDGAWPLVEAAIDQATVMACAEAVGTMSRAF
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLTRDYLVTREQFGRALTANQVIRHRLVDLYVSVEQARAITELAANALHGDAVARMRAVS
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAKAFVSDAGRALGEDVVQLHGAVGMTDEMEIGHCYKRLAAHANLFGDADWHYERLAALD
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HAAQAQA
HHHHCCC
>Mature Secondary Structure
MRRYVERGYGFEQRRAALAEPDGFSRKHWQAFAEMGWLAVGLPEACGGLGDAADQALLAE
CCCHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCEEEECCHHHHCCCCHHHHHHHHHH
ELGRAQPAEPWLANAALCAPLLAACGDPAHAAIAAAMAEGGAMLALAAWETQGRYDAFDI
HHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEC
STTAQQHEPGQWTLDGRKTLVLGGGSAAVLLVLARSGGQRRDRDGLTLFAVPADMRGISV
CCCHHCCCCCCEEECCCEEEEEECCCHHEEEEEECCCCCCCCCCCCEEEEECCCCCCCEE
DALPTYDGRQTASVTLRRATVPDSARIGPVDGAWPLVEAAIDQATVMACAEAVGTMSRAF
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLTRDYLVTREQFGRALTANQVIRHRLVDLYVSVEQARAITELAANALHGDAVARMRAVS
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAKAFVSDAGRALGEDVVQLHGAVGMTDEMEIGHCYKRLAAHANLFGDADWHYERLAALD
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HAAQAQA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8759838; 8969508; 9384377 [H]