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The map label for this gene is yfdE [H]

Identifier: 116694793

GI number: 116694793

Start: 960686

End: 961909

Strand: Direct

Name: yfdE [H]

Synonym: H16_B0847

Alternate gene names: 116694793

Gene position: 960686-961909 (Clockwise)

Preceding gene: 116694789

Following gene: 116694794

Centisome position: 32.99

GC content: 73.37

Gene sequence:

>1224_bases
ATGACGAACCGGCAAGACCTGCCGCTGGCAGGCATACGCGTGGCGGAGTTCGGGCAGTTCATCGCGGCGCCGGGCGCGGC
CATGATGCTGGCCGACCTGGGCGCCGACGTGGTCAAGGTGGAGGCCTTGCGCGGCGACAGCGCGCGGCGCTTTGACGGCA
CCAGCCCGCAGAGCCCGATGTACCTGGCCTACAACCGCGGCAAGCGCGGCATAGCGCTGGACCTGCGCACGCCCGGCGGG
CTGGACGCCGCACGGCGGCTGGCGCTGGCCAGCGACGTGGTGCTGCACAACACCCGCGCCGGCGTGATGGAAGCGCTGGG
GCTGGACGCCGCCACGCTGCGCGCGGCGCGTCCCGACCTGATCCATGCCTCCATCAGCGGCTTCGGCACGCGTGGGCCGT
CGCGCACGCGCCCCGGGCTGGATATTGCCGCGCAGGCCGAGAGCGGCATGATGTCCGTCACCGGCGAGGCCGGCGGGCAG
CCGCTGAAGGCCGGTTTTGCGCTGATCGACGCGGCCACCGCGCTGGCGACCGGCAACGCCATCCTGGCGGCGCTGTTCCG
GCGCGAGCGCACCGGCGCCGGCGAGACCATCGAGACCTCGCTGCTGTCGGTCGGCGTGCAGATGCAGGCCCAGCTGTGGG
CCGAGTACCAGTGCTCCGGCGCGCTGCCGGTGCGCAGCGGCAACAGCCAGCCCAAGGCCGCGCCGGCCGCGGATGTGATC
GCGGTGGCGGACGGGCATATCGTGCTGTCGGCCTATCTCGACGAGCACTGGACGCGCCTGTGCGAGGCCATCGGCCAGCC
GGCGCTGGCGCACGATCCGCGCTTTGCCTGCAACGCGCTGCGCGTGCAGAACCGCCCGGCGCTGCTGGCCATCCTGCACG
ACGCCATGCGCCACCTCAGCGGCGACGCCGCGCGCACGCTGCTGGAGCGCCACCAGGTGGTGGTGGGCGTGGTGCGCGAC
TACCACCAGGTCAACGCGAGCCCCGACGTGCGCGCCAGTGGCGTGCTGCAAGCCGTTGACGACGGCGAGGGCGGCCAGCT
GGAGCTGCCGGGACTGCCCTTCACCATGGCCAGCATGCCGGCAGGCGCGATGCCCGCGGTGCCGCGCCTCGGCCAGCATA
CGACCGAGGTGCTGGCCGAGCTCGGCTTCAGCGCCGCGGAGATTCACACCATGGCCCGCGCCGGCGCGATCGGCGTGGAA
CAAGCCCGGCAGGAGCCCGCATGA

Upstream 100 bases:

>100_bases
GCAGTTTTAGCATCTGCCGTGATGCGCCGTGCCAACGCATGATCGCTCCACATCGTCGCAAACCGCCGGCCGCGCCGGCA
TCTTCGAGGAGTGGCATCGC

Downstream 100 bases:

>100_bases
ACACCCCCCAATCCCCTGTACTGCTGCAGCGCCATGCCGGCTGGGCCGAGGTGGTGCTGAACCGCCCGGCCCGCCGCAAT
GCCGTCGACATGTCGCTGGC

Product: Acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MTNRQDLPLAGIRVAEFGQFIAAPGAAMMLADLGADVVKVEALRGDSARRFDGTSPQSPMYLAYNRGKRGIALDLRTPGG
LDAARRLALASDVVLHNTRAGVMEALGLDAATLRAARPDLIHASISGFGTRGPSRTRPGLDIAAQAESGMMSVTGEAGGQ
PLKAGFALIDAATALATGNAILAALFRRERTGAGETIETSLLSVGVQMQAQLWAEYQCSGALPVRSGNSQPKAAPAADVI
AVADGHIVLSAYLDEHWTRLCEAIGQPALAHDPRFACNALRVQNRPALLAILHDAMRHLSGDAARTLLERHQVVVGVVRD
YHQVNASPDVRASGVLQAVDDGEGGQLELPGLPFTMASMPAGAMPAVPRLGQHTTEVLAELGFSAAEIHTMARAGAIGVE
QARQEPA

Sequences:

>Translated_407_residues
MTNRQDLPLAGIRVAEFGQFIAAPGAAMMLADLGADVVKVEALRGDSARRFDGTSPQSPMYLAYNRGKRGIALDLRTPGG
LDAARRLALASDVVLHNTRAGVMEALGLDAATLRAARPDLIHASISGFGTRGPSRTRPGLDIAAQAESGMMSVTGEAGGQ
PLKAGFALIDAATALATGNAILAALFRRERTGAGETIETSLLSVGVQMQAQLWAEYQCSGALPVRSGNSQPKAAPAADVI
AVADGHIVLSAYLDEHWTRLCEAIGQPALAHDPRFACNALRVQNRPALLAILHDAMRHLSGDAARTLLERHQVVVGVVRD
YHQVNASPDVRASGVLQAVDDGEGGQLELPGLPFTMASMPAGAMPAVPRLGQHTTEVLAELGFSAAEIHTMARAGAIGVE
QARQEPA
>Mature_406_residues
TNRQDLPLAGIRVAEFGQFIAAPGAAMMLADLGADVVKVEALRGDSARRFDGTSPQSPMYLAYNRGKRGIALDLRTPGGL
DAARRLALASDVVLHNTRAGVMEALGLDAATLRAARPDLIHASISGFGTRGPSRTRPGLDIAAQAESGMMSVTGEAGGQP
LKAGFALIDAATALATGNAILAALFRRERTGAGETIETSLLSVGVQMQAQLWAEYQCSGALPVRSGNSQPKAAPAADVIA
VADGHIVLSAYLDEHWTRLCEAIGQPALAHDPRFACNALRVQNRPALLAILHDAMRHLSGDAARTLLERHQVVVGVVRDY
HQVNASPDVRASGVLQAVDDGEGGQLELPGLPFTMASMPAGAMPAVPRLGQHTTEVLAELGFSAAEIHTMARAGAIGVEQ
ARQEPA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=379, Percent_Identity=32.1899736147757, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI300863124, Length=405, Percent_Identity=30.1234567901235, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI13376042, Length=405, Percent_Identity=27.6543209876543, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI300863126, Length=379, Percent_Identity=27.9683377308707, Blast_Score=145, Evalue=1e-34,
Organism=Homo sapiens, GI266456254, Length=399, Percent_Identity=28.8220551378446, Blast_Score=125, Evalue=9e-29,
Organism=Homo sapiens, GI42794625, Length=388, Percent_Identity=29.1237113402062, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI266458393, Length=285, Percent_Identity=32.6315789473684, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI266458397, Length=241, Percent_Identity=35.2697095435685, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=39.8601398601399, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=39.8601398601399, Blast_Score=80, Evalue=4e-15,
Organism=Escherichia coli, GI87082093, Length=391, Percent_Identity=31.4578005115089, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1788717, Length=422, Percent_Identity=27.0142180094787, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1786222, Length=407, Percent_Identity=23.5872235872236, Blast_Score=81, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=210, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=320, Percent_Identity=25, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648431, Length=399, Percent_Identity=36.0902255639098, Blast_Score=211, Evalue=5e-55,
Organism=Drosophila melanogaster, GI24585488, Length=198, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42507; Mature: 42376

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNRQDLPLAGIRVAEFGQFIAAPGAAMMLADLGADVVKVEALRGDSARRFDGTSPQSPM
CCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCE
YLAYNRGKRGIALDLRTPGGLDAARRLALASDVVLHNTRAGVMEALGLDAATLRAARPDL
EEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCCCE
IHASISGFGTRGPSRTRPGLDIAAQAESGMMSVTGEAGGQPLKAGFALIDAATALATGNA
EEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCHH
ILAALFRRERTGAGETIETSLLSVGVQMQAQLWAEYQCSGALPVRSGNSQPKAAPAADVI
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCCCCCCCEE
AVADGHIVLSAYLDEHWTRLCEAIGQPALAHDPRFACNALRVQNRPALLAILHDAMRHLS
EEECCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEECCCCHHHHHHHHHHHHHC
GDAARTLLERHQVVVGVVRDYHQVNASPDVRASGVLQAVDDGEGGQLELPGLPFTMASMP
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCCCEEHHCCC
AGAMPAVPRLGQHTTEVLAELGFSAAEIHTMARAGAIGVEQARQEPA
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure 
TNRQDLPLAGIRVAEFGQFIAAPGAAMMLADLGADVVKVEALRGDSARRFDGTSPQSPM
CCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCE
YLAYNRGKRGIALDLRTPGGLDAARRLALASDVVLHNTRAGVMEALGLDAATLRAARPDL
EEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCCCE
IHASISGFGTRGPSRTRPGLDIAAQAESGMMSVTGEAGGQPLKAGFALIDAATALATGNA
EEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCHH
ILAALFRRERTGAGETIETSLLSVGVQMQAQLWAEYQCSGALPVRSGNSQPKAAPAADVI
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCCCCCCCEE
AVADGHIVLSAYLDEHWTRLCEAIGQPALAHDPRFACNALRVQNRPALLAILHDAMRHLS
EEECCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHEECCCCHHHHHHHHHHHHHC
GDAARTLLERHQVVVGVVRDYHQVNASPDVRASGVLQAVDDGEGGQLELPGLPFTMASMP
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCCCEEHHCCC
AGAMPAVPRLGQHTTEVLAELGFSAAEIHTMARAGAIGVEQARQEPA
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]