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The map label for this gene is yvoA [H]

Identifier: 116694539

GI number: 116694539

Start: 661135

End: 661911

Strand: Direct

Name: yvoA [H]

Synonym: H16_B0588

Alternate gene names: 116694539

Gene position: 661135-661911 (Clockwise)

Preceding gene: 116694537

Following gene: 116694540

Centisome position: 22.7

GC content: 71.04

Gene sequence:

>777_bases
ATGGCAGACACCACGTCCAGCGAACTCCTCGCGCGCAGCCGCCAGCCGGTCTACCTGCAGCTGGCCACCATCTTCCGCCG
CCAGATCGAAAGCGGCGCCTGGCGCGAGGGTGAGCGCATCCCGTCGCTGGAAGAGCTGTGCCGCCAGTACGGCGTGGCGC
GCATGACCATGCACCATGCCTTGTCGATGCTCGATGAAGAAGGGCTGGTGGCGCGCTCGCGCGGGCGCGGCACCTTCGTC
AAGGCGCCGTGCCAGTCGCGGCGGCAGGTGTCGCTGTCGACCAGCTGGGACGAGGCGGTGGCGGTGGGCGCTCAGCTGGA
CACCGAAGCGATGGTCGAATCCGCCGGCAACGTGCCGCTGCCCGCCGATCTCGGCATTCCGTGCCCCGGTGAGCGCGCCG
CCGAATACCACTTCCTGCGCCGGTTGCACCGGCTGGAAGGACGGCCGTTCGCGGTGGGCGAGGTCTATATCGAGGCCGGC
GTCTTTGCGCGCGAGCCCGAGGCCTTCCGCCAGGGCGCCTCGGTGCCGGTGCTGGACCGCTTCCCCGGACTGTCGGTCAG
CACCGCGCGCCAGCGCCTGTCGATCGTCGCGGCCGGGGCCGAATCCGCCGCCGCGCTGGCGCTTGCCGTGGGCGCGCCGG
TGGCTGAGCTGCGCCGTTTTGCCTGTGTCCCGGGCGAGCGCGGCGAGCTGATCGTCTACTACGCACGCATCGAATTCCCG
ACCGACTTTGTCTGCCTGGATTTCGACCTGCTGGCGGCGCGGCCGTGCCCGGCCTGA

Upstream 100 bases:

>100_bases
TAGACTTTTATATAGTCGTCCGGCCAGGCTGCCTCCGGGCGGCCCACGCCTCGCCCCTTTTCCCCGACGTTCACCGGCGT
TTCCCAACCTCCCTTGCCGC

Downstream 100 bases:

>100_bases
CGCCTCCCGTGCAACCAATGCCAACCTGCTGACCCAGAACCTGAGCGGAACCCGAGACATGGAAACTACCCAACCGATGA
ACGGCGCCGAGAGCCTGGTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MADTTSSELLARSRQPVYLQLATIFRRQIESGAWREGERIPSLEELCRQYGVARMTMHHALSMLDEEGLVARSRGRGTFV
KAPCQSRRQVSLSTSWDEAVAVGAQLDTEAMVESAGNVPLPADLGIPCPGERAAEYHFLRRLHRLEGRPFAVGEVYIEAG
VFAREPEAFRQGASVPVLDRFPGLSVSTARQRLSIVAAGAESAAALALAVGAPVAELRRFACVPGERGELIVYYARIEFP
TDFVCLDFDLLAARPCPA

Sequences:

>Translated_258_residues
MADTTSSELLARSRQPVYLQLATIFRRQIESGAWREGERIPSLEELCRQYGVARMTMHHALSMLDEEGLVARSRGRGTFV
KAPCQSRRQVSLSTSWDEAVAVGAQLDTEAMVESAGNVPLPADLGIPCPGERAAEYHFLRRLHRLEGRPFAVGEVYIEAG
VFAREPEAFRQGASVPVLDRFPGLSVSTARQRLSIVAAGAESAAALALAVGAPVAELRRFACVPGERGELIVYYARIEFP
TDFVCLDFDLLAARPCPA
>Mature_257_residues
ADTTSSELLARSRQPVYLQLATIFRRQIESGAWREGERIPSLEELCRQYGVARMTMHHALSMLDEEGLVARSRGRGTFVK
APCQSRRQVSLSTSWDEAVAVGAQLDTEAMVESAGNVPLPADLGIPCPGERAAEYHFLRRLHRLEGRPFAVGEVYIEAGV
FAREPEAFRQGASVPVLDRFPGLSVSTARQRLSIVAAGAESAAALALAVGAPVAELRRFACVPGERGELIVYYARIEFPT
DFVCLDFDLLAARPCPA

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=237, Percent_Identity=26.1603375527426, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28174; Mature: 28042

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTTSSELLARSRQPVYLQLATIFRRQIESGAWREGERIPSLEELCRQYGVARMTMHHA
CCCCCHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHH
LSMLDEEGLVARSRGRGTFVKAPCQSRRQVSLSTSWDEAVAVGAQLDTEAMVESAGNVPL
HHHHCCCCCEEECCCCCCEEECCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHCCCCCCC
PADLGIPCPGERAAEYHFLRRLHRLEGRPFAVGEVYIEAGVFAREPEAFRQGASVPVLDR
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHEEEECCCCCCCCHHHHCCCCCCHHHC
FPGLSVSTARQRLSIVAAGAESAAALALAVGAPVAELRRFACVPGERGELIVYYARIEFP
CCCCCHHHHHHHHHHEECCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEEEECCC
TDFVCLDFDLLAARPCPA
CCEEEECHHHHCCCCCCC
>Mature Secondary Structure 
ADTTSSELLARSRQPVYLQLATIFRRQIESGAWREGERIPSLEELCRQYGVARMTMHHA
CCCCHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHH
LSMLDEEGLVARSRGRGTFVKAPCQSRRQVSLSTSWDEAVAVGAQLDTEAMVESAGNVPL
HHHHCCCCCEEECCCCCCEEECCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHCCCCCCC
PADLGIPCPGERAAEYHFLRRLHRLEGRPFAVGEVYIEAGVFAREPEAFRQGASVPVLDR
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHEEEECCCCCCCCHHHHCCCCCCHHHC
FPGLSVSTARQRLSIVAAGAESAAALALAVGAPVAELRRFACVPGERGELIVYYARIEFP
CCCCCHHHHHHHHHHEECCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEEEECCC
TDFVCLDFDLLAARPCPA
CCEEEECHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]