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The map label for this gene is nocR [H]

Identifier: 116694432

GI number: 116694432

Start: 544583

End: 545512

Strand: Direct

Name: nocR [H]

Synonym: H16_B0481

Alternate gene names: 116694432

Gene position: 544583-545512 (Clockwise)

Preceding gene: 116694421

Following gene: 116694435

Centisome position: 18.7

GC content: 67.2

Gene sequence:

>930_bases
ATGTCCCGTCCCCTGAATTTCCGCCAGATCGAGGCGTTCCGCGCGGTCATGCTGACCGGAACTACGACCGCGGCCGCTGC
CATGCTGCATACGACCCAGCCGTCGGTGAGCCGATTGCTGGCCCAGATGCAGGCGGCGACTGAACTGAAGCTGTTCGATA
TCCAGAAGGGCCGGCTGCGGCCGACGCAGGAAGCGCGGCGCCTGTTCGACACGGTGCAGAACCACTTCCAGGGGCTGGCG
CGGATCGAACAGGACGTGGCGGTGCTGCGCAAGTCCGGCACCGGCGTGCTGCGTATCGGTTGCACGCCTTCACTCGGGCT
GGGGGTGATGCCCAAGGTGATCCGGCCGTTCACCGAGCGCCACCCGGACGTGCATATCAGCCTGCAAACGGTCGGCGGGC
ACCAGTTGCGCGAAGGGTTGCTGCATGGCCTCTACGACCTGGTGCTGACCACCAGCGAGATCGATCATCCGCACCTGGAT
GTCAACGTGGTGCATGAGTCGGGGGCGGTGTGCGTCATGCACCCGGAACACGCGCTGGCGGCGCGCGACACCCTTCGCGT
GCGCGACTTGCGCGGGCAGTTCCTGATCCTGCTGAACGCAGACGATGCGCTGCACCTGGCGGTGCAGCGGCTCATGCAAA
AAGCCGGCGTCGAGCCGTCGGCGACCATCGAGACCACTTACTCAGGCACGATCTGCACGATGGCGGCCGAAGGGGCGGGC
ATAGGGATCGTCAATCCCTATGTCGCGGCTGTATTCGGACACGGCTTGCGGGTGGTGCCGCTCGCACCGCGCTGCCCGGT
GGAGGTGCGCATGGCGTTCTCCGGGCATTCCGCGCCATCGGAGATCGCGGAGGAATTCGCGGCGCTGCTGGCGGCGCATT
TTCGCGTGCGCTCGCCGCTGGCGGAGAAGGCGGGGCGGGGGCGGGGCTGA

Upstream 100 bases:

>100_bases
AGTGTAGAGGAGGGGTTGGCATTCTGAATAATTCTTTGTTCAATGCACCCTATGCAGATTTGATATACATTGCCCGACGC
GCCCGTCCCTTGCCGATGCC

Downstream 100 bases:

>100_bases
AGGCCCCGGGGCAGTCGCTCAGTCCAGCGACACGCCGAGCTTGCGGATCAGTTCGCCCCAGCGCGTACGCCCCGCGGCCA
GCCATTGCGCTGCCGCCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MSRPLNFRQIEAFRAVMLTGTTTAAAAMLHTTQPSVSRLLAQMQAATELKLFDIQKGRLRPTQEARRLFDTVQNHFQGLA
RIEQDVAVLRKSGTGVLRIGCTPSLGLGVMPKVIRPFTERHPDVHISLQTVGGHQLREGLLHGLYDLVLTTSEIDHPHLD
VNVVHESGAVCVMHPEHALAARDTLRVRDLRGQFLILLNADDALHLAVQRLMQKAGVEPSATIETTYSGTICTMAAEGAG
IGIVNPYVAAVFGHGLRVVPLAPRCPVEVRMAFSGHSAPSEIAEEFAALLAAHFRVRSPLAEKAGRGRG

Sequences:

>Translated_309_residues
MSRPLNFRQIEAFRAVMLTGTTTAAAAMLHTTQPSVSRLLAQMQAATELKLFDIQKGRLRPTQEARRLFDTVQNHFQGLA
RIEQDVAVLRKSGTGVLRIGCTPSLGLGVMPKVIRPFTERHPDVHISLQTVGGHQLREGLLHGLYDLVLTTSEIDHPHLD
VNVVHESGAVCVMHPEHALAARDTLRVRDLRGQFLILLNADDALHLAVQRLMQKAGVEPSATIETTYSGTICTMAAEGAG
IGIVNPYVAAVFGHGLRVVPLAPRCPVEVRMAFSGHSAPSEIAEEFAALLAAHFRVRSPLAEKAGRGRG
>Mature_308_residues
SRPLNFRQIEAFRAVMLTGTTTAAAAMLHTTQPSVSRLLAQMQAATELKLFDIQKGRLRPTQEARRLFDTVQNHFQGLAR
IEQDVAVLRKSGTGVLRIGCTPSLGLGVMPKVIRPFTERHPDVHISLQTVGGHQLREGLLHGLYDLVLTTSEIDHPHLDV
NVVHESGAVCVMHPEHALAARDTLRVRDLRGQFLILLNADDALHLAVQRLMQKAGVEPSATIETTYSGTICTMAAEGAGI
GIVNPYVAAVFGHGLRVVPLAPRCPVEVRMAFSGHSAPSEIAEEFAALLAAHFRVRSPLAEKAGRGRG

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=289, Percent_Identity=33.5640138408304, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI157672245, Length=282, Percent_Identity=25.886524822695, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33535; Mature: 33404

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPLNFRQIEAFRAVMLTGTTTAAAAMLHTTQPSVSRLLAQMQAATELKLFDIQKGRLR
CCCCCCHHHHHHHHHHEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCCCCC
PTQEARRLFDTVQNHFQGLARIEQDVAVLRKSGTGVLRIGCTPSLGLGVMPKVIRPFTER
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHC
HPDVHISLQTVGGHQLREGLLHGLYDLVLTTSEIDHPHLDVNVVHESGAVCVMHPEHALA
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCHHHH
ARDTLRVRDLRGQFLILLNADDALHLAVQRLMQKAGVEPSATIETTYSGTICTMAAEGAG
HHHHHHHEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCC
IGIVNPYVAAVFGHGLRVVPLAPRCPVEVRMAFSGHSAPSEIAEEFAALLAAHFRVRSPL
CCCCHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCH
AEKAGRGRG
HHHCCCCCC
>Mature Secondary Structure 
SRPLNFRQIEAFRAVMLTGTTTAAAAMLHTTQPSVSRLLAQMQAATELKLFDIQKGRLR
CCCCCHHHHHHHHHHEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCCCCC
PTQEARRLFDTVQNHFQGLARIEQDVAVLRKSGTGVLRIGCTPSLGLGVMPKVIRPFTER
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHC
HPDVHISLQTVGGHQLREGLLHGLYDLVLTTSEIDHPHLDVNVVHESGAVCVMHPEHALA
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCCHHHH
ARDTLRVRDLRGQFLILLNADDALHLAVQRLMQKAGVEPSATIETTYSGTICTMAAEGAG
HHHHHHHEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCC
IGIVNPYVAAVFGHGLRVVPLAPRCPVEVRMAFSGHSAPSEIAEEFAALLAAHFRVRSPL
CCCCHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCH
AEKAGRGRG
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]