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The map label for this gene is rbcR [H]

Identifier: 116694292

GI number: 116694292

Start: 380085

End: 380969

Strand: Direct

Name: rbcR [H]

Synonym: H16_B0338

Alternate gene names: 116694292

Gene position: 380085-380969 (Clockwise)

Preceding gene: 116694290

Following gene: 116694295

Centisome position: 13.05

GC content: 72.2

Gene sequence:

>885_bases
ATGCGCGAGATCAGCCTGGACCGCCTGCGTACCCTCGTCGCCATCGCCGATCTGGGTTCCTTCGCCGAAGCCGCGCGCGC
GTTGCACCTGGCTCCGCCCACCGTCAGCCTTCACATTGCCGAGCTGGAAGCCCGTGTCGGTGCGCAACTGCTGACGCGCA
GGCGCGGTGAGGTGCGTCCGTCGTCCATTGGCGAGACCCTGGTCGATCGCGCCCGCCGCCTGCTGGCCGATGCCGACCTT
GCGCTGGACGACGTGCAGCGTCAGGTGCAGGGGTTGACCGGCCGCGTGCGCCTCGGCGCCTCGACCGGGGCCATCGCCCA
CCTGCTGCCGCAGGCGCTGGCCATGCTGGCGGAGCGGCATCCCGACATCGACGTGCAGGTGGCCGTGCTTACCTCGGAGG
AGACGCTGGCGCGGCTGGCCGCCGGCACGCTGGAGATCGGTCTGGTGGCACTGCCACAGGCGCGCGTGGCGGGGCTGACC
ATCCGCCCTTGGCGGCGCGATCCGGTACGGGCTTTCCTGCCAGCGAGCTGGCCCTGCCCGGCGCGCATCACGCCGGCCTG
GCTGGCAACGCGCCCGCTGATCCTCAATGACGGCACCACGCGCCTGTCGCGCCTGACCGCCGAGTGGTTCGCCAGCGGTG
GCCACAGGCCGGCGCCGCGGATTCAGCTCAACTACAACGACGCCATCAAGAGCCTGGTGGCGGCCGGCTATGGCGCGGCC
CTGCTGCCACACGAGGTCACCACGCCGGCGCCGGATGCGCGCATAGTGATGCGGCCGCTGCGGCCGGCGTTGTGGCGGCG
ACTGGGGTTGGCGCACAGCGGGGAGCGGGTAGAACGCGCCACGGAATACGTACGGGAGGCCCTGTGGGCGCTGCGGGCGG
GATAG

Upstream 100 bases:

>100_bases
CGGCTAGAATCGAAGAAGTTGAATTTCATGACGATGAAATTCACGTTTCCTGAACGATATTCCTCGTCAGCAGATACGCC
CTTAACCGGAGTGCCGCCCC

Downstream 100 bases:

>100_bases
TGCCGTTGGCCACACGTCGGCCGGCGGCTGTGCGCGGCGCCGCCACGCGTTGATCGTGTCCTCGATTGCATTGATGGAGA
CATTTGCCGCGCCTGTCTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MREISLDRLRTLVAIADLGSFAEAARALHLAPPTVSLHIAELEARVGAQLLTRRRGEVRPSSIGETLVDRARRLLADADL
ALDDVQRQVQGLTGRVRLGASTGAIAHLLPQALAMLAERHPDIDVQVAVLTSEETLARLAAGTLEIGLVALPQARVAGLT
IRPWRRDPVRAFLPASWPCPARITPAWLATRPLILNDGTTRLSRLTAEWFASGGHRPAPRIQLNYNDAIKSLVAAGYGAA
LLPHEVTTPAPDARIVMRPLRPALWRRLGLAHSGERVERATEYVREALWALRAG

Sequences:

>Translated_294_residues
MREISLDRLRTLVAIADLGSFAEAARALHLAPPTVSLHIAELEARVGAQLLTRRRGEVRPSSIGETLVDRARRLLADADL
ALDDVQRQVQGLTGRVRLGASTGAIAHLLPQALAMLAERHPDIDVQVAVLTSEETLARLAAGTLEIGLVALPQARVAGLT
IRPWRRDPVRAFLPASWPCPARITPAWLATRPLILNDGTTRLSRLTAEWFASGGHRPAPRIQLNYNDAIKSLVAAGYGAA
LLPHEVTTPAPDARIVMRPLRPALWRRLGLAHSGERVERATEYVREALWALRAG
>Mature_294_residues
MREISLDRLRTLVAIADLGSFAEAARALHLAPPTVSLHIAELEARVGAQLLTRRRGEVRPSSIGETLVDRARRLLADADL
ALDDVQRQVQGLTGRVRLGASTGAIAHLLPQALAMLAERHPDIDVQVAVLTSEETLARLAAGTLEIGLVALPQARVAGLT
IRPWRRDPVRAFLPASWPCPARITPAWLATRPLILNDGTTRLSRLTAEWFASGGHRPAPRIQLNYNDAIKSLVAAGYGAA
LLPHEVTTPAPDARIVMRPLRPALWRRLGLAHSGERVERATEYVREALWALRAG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=259, Percent_Identity=27.7992277992278, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788748, Length=288, Percent_Identity=28.125, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790399, Length=274, Percent_Identity=25.9124087591241, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788887, Length=262, Percent_Identity=27.0992366412214, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790208, Length=256, Percent_Identity=26.171875, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788297, Length=254, Percent_Identity=26.3779527559055, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790262, Length=293, Percent_Identity=27.6450511945392, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=121, Percent_Identity=31.404958677686, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787601, Length=126, Percent_Identity=30.1587301587302, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081904, Length=148, Percent_Identity=31.7567567567568, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31996; Mature: 31996

Theoretical pI: Translated: 11.49; Mature: 11.49

Prosite motif: PS50931 HTH_LYSR ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREISLDRLRTLVAIADLGSFAEAARALHLAPPTVSLHIAELEARVGAQLLTRRRGEVRP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCC
SSIGETLVDRARRLLADADLALDDVQRQVQGLTGRVRLGASTGAIAHLLPQALAMLAERH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCC
PDIDVQVAVLTSEETLARLAAGTLEIGLVALPQARVAGLTIRPWRRDPVRAFLPASWPCP
CCCCEEEEEEECHHHHHHHHHHHHHEEEEECCCHHHCCEEECCCCCCCCHHCCCCCCCCC
ARITPAWLATRPLILNDGTTRLSRLTAEWFASGGHRPAPRIQLNYNDAIKSLVAAGYGAA
CCCCHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHCCCCC
LLPHEVTTPAPDARIVMRPLRPALWRRLGLAHSGERVERATEYVREALWALRAG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MREISLDRLRTLVAIADLGSFAEAARALHLAPPTVSLHIAELEARVGAQLLTRRRGEVRP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCC
SSIGETLVDRARRLLADADLALDDVQRQVQGLTGRVRLGASTGAIAHLLPQALAMLAERH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCC
PDIDVQVAVLTSEETLARLAAGTLEIGLVALPQARVAGLTIRPWRRDPVRAFLPASWPCP
CCCCEEEEEEECHHHHHHHHHHHHHEEEEECCCHHHCCEEECCCCCCCCHHCCCCCCCCC
ARITPAWLATRPLILNDGTTRLSRLTAEWFASGGHRPAPRIQLNYNDAIKSLVAAGYGAA
CCCCHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHCCCCC
LLPHEVTTPAPDARIVMRPLRPALWRRLGLAHSGERVERATEYVREALWALRAG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]