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The map label for this gene is kdgT [H]

Identifier: 116694271

GI number: 116694271

Start: 354700

End: 355683

Strand: Direct

Name: kdgT [H]

Synonym: H16_B0317

Alternate gene names: 116694271

Gene position: 354700-355683 (Clockwise)

Preceding gene: 116694268

Following gene: 116694272

Centisome position: 12.18

GC content: 65.14

Gene sequence:

>984_bases
ATGCAGATTTCTATCAAACGCGCCATCGAGCGCGTGCCCGGCGGCATGATGATCGTGCCGCTGCTGATCGGTTCGCTCGT
TGCCACGTTCGCGCCGGATGGGCCGAAGTTTTTTGGATCGTTTACCGGCGCGCTTTTTACCGGTGCCCTGCCCATCCTCG
CGGTGTTCTATGTCTGCATGGGGGCAAGCATCAACATCAAAGCCACGCCTTACATTCTCAAGAAGGGCGGCGTGTTGTTC
GGCACCAAGGTCGGCACGGCAATGGTGTTGGGCGTGATCATGGGGCACTTCCTGGGCGAGGCGCCGATCAGTGCCGGGAT
GTTTGCCGGCCTGTCGACGCTTGCCGTGGTGGCCGCGATGAACGACACCAACGGCGGCCTGTACATGGCGCTGATGGGCC
AGTACGGCAAGCCTGAAGACGTGGGCGCCTACAGCATCATGTCGCTCGAGTCCGGCCCGTTCCTGACGATGGTGACGCTG
GGCGTGGCGGGTTTGTCCGCGTTCCCATGGCCGACGATGGTCGGCAGCATTCTTCCGCTCATGCTCGGCATGTTGCTGGG
CAACCTGGATCGGGAGATGCGCGATTTCCTGGGTAAGGCCGTGCCGGTCATGATTCCCTTTTTCGCACTGGCGCTGGGCG
CAGGCCTGGACCTGCACAAGGTCTGGCAGGCGGGCATGCTGGGCCTCGGCCTTGGTGTTGCCGTGGTGGCCGTCACCGGC
TGCGCGCTGTACTTCGCTGACCGCCTCACCGGCGGCACGGGTGTGGCAGGTGTCGCAGCCGCCAGCACCGCCGGCAATGC
CGCCGCCGTGCCGACGCTGGTAGCGGCGGCTAATCCGGTCTACGCAGAATCGGCCAAGAGCGCCACGATCCTGGTGGCCG
CCTGCGTGGTGGTCACCGCCGTACTGACGCCATTGGTGACCGCCTGGATTGCCCGCCGCGTGGCGGGCAAGGAGGCCGAG
GCGTTGGTGAGGACCGCCGCATGA

Upstream 100 bases:

>100_bases
AATTCAGTCAGCTGCACTACACTCTGATGATATTTGATCGATTCGATCAAATGTTTGCTCGAAACATACAAGGCCGCATC
CTCAGCGGCAGGAGACAACC

Downstream 100 bases:

>100_bases
GCTGGCTTATCATCGCCGACGACCTGTCAGGCGCTGCAGACTGCGCGATCGGCTACGCCATGTCTGGCGCCCGGACCGTT
GTAACGCTGGAGGCGGCGCC

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MQISIKRAIERVPGGMMIVPLLIGSLVATFAPDGPKFFGSFTGALFTGALPILAVFYVCMGASINIKATPYILKKGGVLF
GTKVGTAMVLGVIMGHFLGEAPISAGMFAGLSTLAVVAAMNDTNGGLYMALMGQYGKPEDVGAYSIMSLESGPFLTMVTL
GVAGLSAFPWPTMVGSILPLMLGMLLGNLDREMRDFLGKAVPVMIPFFALALGAGLDLHKVWQAGMLGLGLGVAVVAVTG
CALYFADRLTGGTGVAGVAAASTAGNAAAVPTLVAAANPVYAESAKSATILVAACVVVTAVLTPLVTAWIARRVAGKEAE
ALVRTAA

Sequences:

>Translated_327_residues
MQISIKRAIERVPGGMMIVPLLIGSLVATFAPDGPKFFGSFTGALFTGALPILAVFYVCMGASINIKATPYILKKGGVLF
GTKVGTAMVLGVIMGHFLGEAPISAGMFAGLSTLAVVAAMNDTNGGLYMALMGQYGKPEDVGAYSIMSLESGPFLTMVTL
GVAGLSAFPWPTMVGSILPLMLGMLLGNLDREMRDFLGKAVPVMIPFFALALGAGLDLHKVWQAGMLGLGLGVAVVAVTG
CALYFADRLTGGTGVAGVAAASTAGNAAAVPTLVAAANPVYAESAKSATILVAACVVVTAVLTPLVTAWIARRVAGKEAE
ALVRTAA
>Mature_327_residues
MQISIKRAIERVPGGMMIVPLLIGSLVATFAPDGPKFFGSFTGALFTGALPILAVFYVCMGASINIKATPYILKKGGVLF
GTKVGTAMVLGVIMGHFLGEAPISAGMFAGLSTLAVVAAMNDTNGGLYMALMGQYGKPEDVGAYSIMSLESGPFLTMVTL
GVAGLSAFPWPTMVGSILPLMLGMLLGNLDREMRDFLGKAVPVMIPFFALALGAGLDLHKVWQAGMLGLGLGVAVVAVTG
CALYFADRLTGGTGVAGVAAASTAGNAAAVPTLVAAANPVYAESAKSATILVAACVVVTAVLTPLVTAWIARRVAGKEAE
ALVRTAA

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=319, Percent_Identity=50.7836990595611, Blast_Score=285, Evalue=4e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 33218; Mature: 33218

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQISIKRAIERVPGGMMIVPLLIGSLVATFAPDGPKFFGSFTGALFTGALPILAVFYVCM
CCCHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GASINIKATPYILKKGGVLFGTKVGTAMVLGVIMGHFLGEAPISAGMFAGLSTLAVVAAM
CCCCEEECCCEEEECCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
NDTNGGLYMALMGQYGKPEDVGAYSIMSLESGPFLTMVTLGVAGLSAFPWPTMVGSILPL
CCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
MLGMLLGNLDREMRDFLGKAVPVMIPFFALALGAGLDLHKVWQAGMLGLGLGVAVVAVTG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
CALYFADRLTGGTGVAGVAAASTAGNAAAVPTLVAAANPVYAESAKSATILVAACVVVTA
HHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH
VLTPLVTAWIARRVAGKEAEALVRTAA
HHHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MQISIKRAIERVPGGMMIVPLLIGSLVATFAPDGPKFFGSFTGALFTGALPILAVFYVCM
CCCHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GASINIKATPYILKKGGVLFGTKVGTAMVLGVIMGHFLGEAPISAGMFAGLSTLAVVAAM
CCCCEEECCCEEEECCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
NDTNGGLYMALMGQYGKPEDVGAYSIMSLESGPFLTMVTLGVAGLSAFPWPTMVGSILPL
CCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
MLGMLLGNLDREMRDFLGKAVPVMIPFFALALGAGLDLHKVWQAGMLGLGLGVAVVAVTG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
CALYFADRLTGGTGVAGVAAASTAGNAAAVPTLVAAANPVYAESAKSATILVAACVVVTA
HHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH
VLTPLVTAWIARRVAGKEAEALVRTAA
HHHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA