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The map label for this gene is csiR [H]

Identifier: 116694240

GI number: 116694240

Start: 321810

End: 322526

Strand: Direct

Name: csiR [H]

Synonym: H16_B0285

Alternate gene names: 116694240

Gene position: 321810-322526 (Clockwise)

Preceding gene: 116694235

Following gene: 116694251

Centisome position: 11.05

GC content: 62.9

Gene sequence:

>717_bases
ATGCGGACTTCCGATTTGCCGCGCAGGCTGCAGCACGCAGAGCCGGCGCCGACCCAGACCATTTCCGAGAAGGCGTATCA
ACTGCTGCGCGCAGACATCATCGCGGGCAGCCTGGCCCCTGGGGAAAAGCTTCGCCTGCAGGCATTGCAGGAACGCTACG
AACTCGGCGTGAGCCCGATCCGCGAGGCCCTGATGCTTCTCTGCGGCGAAGGACTGGTCAGCAATGAGGGCCAAAGGGGC
TTCAGCGTGACCAAGCTCTCCAGGAGTGATCTGCTCGATCTGATGCATGCGCGCACCTCGATCGAACTGCTCCTGCTGGC
CGATGCCATTGAGCATGGCGACGATGACTGGGGCGCGAACATCATGGCCGCCTATTACAAGCTGACCAGGGCGCGGCTCC
CGACCGATGCATCGGACACGGTGGCAGTGGAACTGTGGGAAACGGCTCACCGGCGCTTTCACCTCGCGCTGGTTGCAGCG
GCTACGTCGAAGTGGCTACTGCGCATCGACGAACAACTGGTCGACCATTCTGAGCGGTATCGTCGAATTCGCCTGGCCTA
CCCGCGCTCGAGCAAGGAACTGGCCGACGATGTGTTGAAGGAACACCTGGATCTCATGGAGGCGGTGCTCGCGCGCGACA
CGGAGAAAGCCTCCGCGCTGCTGCGGCACCACCTGATGCGCACCGCCGAAGTCCTCAGCAAGCGCTTTGCCGACTAG

Upstream 100 bases:

>100_bases
GGATAGTGCAAAATTTCGTTGTTGGAGGTAAATTTATGAAATTGCCAGTGTCCTATAGATGCCGGCCAGCCCTTGCCGCT
CATCCATCCAACAACAAATC

Downstream 100 bases:

>100_bases
CCCCAATTTCAGGGCTTGTCGGGCAGCGCGACATAGGCCACGATTTCGATGCGCATGCCTGGCACTACCAAGGCCTTGGC
GATCACCGTCGAGCGGTTTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Carbon starvation induced regulator [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MRTSDLPRRLQHAEPAPTQTISEKAYQLLRADIIAGSLAPGEKLRLQALQERYELGVSPIREALMLLCGEGLVSNEGQRG
FSVTKLSRSDLLDLMHARTSIELLLLADAIEHGDDDWGANIMAAYYKLTRARLPTDASDTVAVELWETAHRRFHLALVAA
ATSKWLLRIDEQLVDHSERYRRIRLAYPRSSKELADDVLKEHLDLMEAVLARDTEKASALLRHHLMRTAEVLSKRFAD

Sequences:

>Translated_238_residues
MRTSDLPRRLQHAEPAPTQTISEKAYQLLRADIIAGSLAPGEKLRLQALQERYELGVSPIREALMLLCGEGLVSNEGQRG
FSVTKLSRSDLLDLMHARTSIELLLLADAIEHGDDDWGANIMAAYYKLTRARLPTDASDTVAVELWETAHRRFHLALVAA
ATSKWLLRIDEQLVDHSERYRRIRLAYPRSSKELADDVLKEHLDLMEAVLARDTEKASALLRHHLMRTAEVLSKRFAD
>Mature_238_residues
MRTSDLPRRLQHAEPAPTQTISEKAYQLLRADIIAGSLAPGEKLRLQALQERYELGVSPIREALMLLCGEGLVSNEGQRG
FSVTKLSRSDLLDLMHARTSIELLLLADAIEHGDDDWGANIMAAYYKLTRARLPTDASDTVAVELWETAHRRFHLALVAA
ATSKWLLRIDEQLVDHSERYRRIRLAYPRSSKELADDVLKEHLDLMEAVLARDTEKASALLRHHLMRTAEVLSKRFAD

Specific function: Modulates expression of csiD and lhgO in a temporal manner during entry into stationary phase or during the first few hours of carbon starvation [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=213, Percent_Identity=40.3755868544601, Blast_Score=147, Evalue=7e-37,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26914; Mature: 26914

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSDLPRRLQHAEPAPTQTISEKAYQLLRADIIAGSLAPGEKLRLQALQERYELGVSPI
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHH
REALMLLCGEGLVSNEGQRGFSVTKLSRSDLLDLMHARTSIELLLLADAIEHGDDDWGAN
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
IMAAYYKLTRARLPTDASDTVAVELWETAHRRFHLALVAAATSKWLLRIDEQLVDHSERY
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRIRLAYPRSSKELADDVLKEHLDLMEAVLARDTEKASALLRHHLMRTAEVLSKRFAD
HEEHEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRTSDLPRRLQHAEPAPTQTISEKAYQLLRADIIAGSLAPGEKLRLQALQERYELGVSPI
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHH
REALMLLCGEGLVSNEGQRGFSVTKLSRSDLLDLMHARTSIELLLLADAIEHGDDDWGAN
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
IMAAYYKLTRARLPTDASDTVAVELWETAHRRFHLALVAAATSKWLLRIDEQLVDHSERY
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRIRLAYPRSSKELADDVLKEHLDLMEAVLARDTEKASALLRHHLMRTAEVLSKRFAD
HEEHEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8297211; 7984428 [H]