Click here to switch to the map view.

The map label for this gene is flgD [H]

Identifier: 116694218

GI number: 116694218

Start: 298458

End: 299123

Strand: Direct

Name: flgD [H]

Synonym: H16_B0263

Alternate gene names: 116694218

Gene position: 298458-299123 (Clockwise)

Preceding gene: 116694217

Following gene: 116694219

Centisome position: 10.25

GC content: 66.82

Gene sequence:

>666_bases
ATGACAACCACCTCCGCGGTAGGCAGCAACACCCAGGGCATCAACGACGCCCTCAAGAGCGGCAGCGCCAGCGCGTCCGA
GCTGCAGAACAACTTCCTGACCATGCTCGTCACGCAGATGAACAACCAGGACCCGCTTAACCCGATGGACAACGCGCAGC
TGACCTCGCAGCTGGCGCAGATCAGCACGGTCAGCGGCATGCAGACCATGAACGCGACGCTGTCGCAGTTGCTGTCGCAG
GTCAGCGCCAGCCGCGCCATGGACTCCGCGGCGCTGATCGGCCATACCGTGATGGTGCCGGGCAAGCAGGTGTCGGTGGC
AGGCGGCGTGCCGGGCAAGTTTGGCCTGGACCTGCCGTCGACCGCGGATGCGGTCACCGTCGACGTGCTCGACAAGGACG
GCAACGTGGTGCGCACCATCGACATGAAGGGGCAGACCGCGGGCGTGCACAACGTCGCATGGGACGGCAAGAACAACGCC
GGCGCGGCCGTGGCCGACGGCGACTACACCTTCAAGGTGACCGCCACCGCCAACGGCACCTCGGTGCAGCCGGTGGCGCT
GGTCTACGGCAAGGTCCAGAGCATCAGCGGCGACGCCAGCGGCGTGCTGGTGGACCTGGGCGACGGACAGACCGCGAACG
TCGACGACGTACGCCGCATTCTCTGA

Upstream 100 bases:

>100_bases
ACCGCCAAGAACATGATGCTCAAGACGCTGACGATCGGCCAGTGACAAGCCTCGGCCTGTATCGGCAACGCCTCCACCAG
CACGCACACAACGAACCGAC

Downstream 100 bases:

>100_bases
AACGCAGGTGCCGGCAGCGCACAGGCGCCGGCCGGCTTCAACGACCAAGCAAAAAGGAAGCAATCATGGGTTTCGGTCAA
GGGGTAAGCGGCCTGAACGC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTTTSAVGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSGMQTMNATLSQLLSQ
VSASRAMDSAALIGHTVMVPGKQVSVAGGVPGKFGLDLPSTADAVTVDVLDKDGNVVRTIDMKGQTAGVHNVAWDGKNNA
GAAVADGDYTFKVTATANGTSVQPVALVYGKVQSISGDASGVLVDLGDGQTANVDDVRRIL

Sequences:

>Translated_221_residues
MTTTSAVGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSGMQTMNATLSQLLSQ
VSASRAMDSAALIGHTVMVPGKQVSVAGGVPGKFGLDLPSTADAVTVDVLDKDGNVVRTIDMKGQTAGVHNVAWDGKNNA
GAAVADGDYTFKVTATANGTSVQPVALVYGKVQSISGDASGVLVDLGDGQTANVDDVRRIL
>Mature_220_residues
TTTSAVGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQISTVSGMQTMNATLSQLLSQV
SASRAMDSAALIGHTVMVPGKQVSVAGGVPGKFGLDLPSTADAVTVDVLDKDGNVVRTIDMKGQTAGVHNVAWDGKNNAG
AAVADGDYTFKVTATANGTSVQPVALVYGKVQSISGDASGVLVDLGDGQTANVDDVRRIL

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=204, Percent_Identity=44.1176470588235, Blast_Score=161, Evalue=3e-41,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 22584; Mature: 22452

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTSAVGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQ
CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHEEHEECCCCCCCCCCCCCHHHHHHHHH
ISTVSGMQTMNATLSQLLSQVSASRAMDSAALIGHTVMVPGKQVSVAGGVPGKFGLDLPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEEECCCCCCCCCCCCC
TADAVTVDVLDKDGNVVRTIDMKGQTAGVHNVAWDGKNNAGAAVADGDYTFKVTATANGT
CCCEEEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEECCCEEEEEEEECCCC
SVQPVALVYGKVQSISGDASGVLVDLGDGQTANVDDVRRIL
CCCHHHEEEEHHHCCCCCCCEEEEECCCCCCCCHHHHHHHC
>Mature Secondary Structure 
TTTSAVGSNTQGINDALKSGSASASELQNNFLTMLVTQMNNQDPLNPMDNAQLTSQLAQ
CCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHEEHEECCCCCCCCCCCCCHHHHHHHHH
ISTVSGMQTMNATLSQLLSQVSASRAMDSAALIGHTVMVPGKQVSVAGGVPGKFGLDLPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEEEECCCCCCCCCCCCC
TADAVTVDVLDKDGNVVRTIDMKGQTAGVHNVAWDGKNNAGAAVADGDYTFKVTATANGT
CCCEEEEEEEECCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEECCCEEEEEEEECCCC
SVQPVALVYGKVQSISGDASGVLVDLGDGQTANVDDVRRIL
CCCHHHEEEEHHHCCCCCCCEEEEECCCCCCCCHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]