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The map label for this gene is yfdE [H]

Identifier: 116694049

GI number: 116694049

Start: 103055

End: 104176

Strand: Direct

Name: yfdE [H]

Synonym: H16_B0089

Alternate gene names: 116694049

Gene position: 103055-104176 (Clockwise)

Preceding gene: 116694048

Following gene: 116694054

Centisome position: 3.54

GC content: 69.52

Gene sequence:

>1122_bases
ATGACCCAAACCAGCCCCGGCGCGCTCGCCGGCATCCGCGTGGTCGACCTGTCGCGCATCCTGGGCGGCCCGTACTGCGG
CCAGATCCTGGGCGACCACGGCGCCGACGTGCTCAAGATCGAACCGCCGCAGGGCGACGACACCCGCACCTGGGGGCCGC
CGTTCAAGGACGGCGTGGCCTCTTACTACTTCGGCCTGAACCGCAACAAGCGCGTGATGCGGCTGGACCTGACCGCCGAG
GCGGATCGTGAAGTCCTGCTTGCGCTGCTGGCCGAGGCCGACGTGCTGGTCGAGAACTTCAAGACCGGCACCATGGAGAA
GTGGGGGCTGGGCTACGACACGCTGTCCGCGCGCTTCCCGCGGCTGGTCCATTGCCGCGTGTCCGGCTTCGGCGCGGATG
GCCCGCTGGGCGGCCTGCCCGGCTACGACGCCGCCATCCAGGCCATGTCCGGCATCATGAGCATCAACGGCGAGGCCGAT
GGCGATCCGCTGCGCGTGGGTTTGCCGGTGGTGGACATGGTGACCGGCCTGAACGCCGTGATCGGCGTGCTGCTGGCACT
GCAGGAGCGCGCGCGCAGCGGGCGCGGCCAGTTCGTCGAGGCCGCGCTCTATGACTCCGGCCTGTCGCTGCTGCATCCGC
ATGCGGCCAACTGGTTCATGAGCGGCAAGACGCCGCAGCGCACCGGCAATGCGCATCCCAACATCTACCCGTACGACACG
GTGGCGACCGCCACCGACCCGATCTTCCTGGCGGTGGGCAACGACCGGCAGTTCCGCATCCTGTGCGAGCACCTGCGGCT
GCCTGCACTGGCCGATGACGAGCGCTATGCCACGGCGGGCGCGCGCTCGGTGAACCGCGTGGCGCTGAAGGCGGAACTGG
AAGCCAGGCTGTGCGAGTTCGATGGCAAGGTGCTGGCCGACGAGCTGGTGGCCGCGGGCGTGCCCTGCGCGCCGGTGCTG
TCCGTGGCCGACGCCTTGCAGCATCCGCATACGCAGCACCGCGAGATGGTGGTGGAGATGGAGGGCGGCTACAAAGGGCT
GGGTGCGCCGGTCAAGCTGAGCCGGACGCCGGCGACGTACCGGTATGCGCCGCTCACCGAAGGGGACGAGTTCCTGGATT
AG

Upstream 100 bases:

>100_bases
AGCAGCTTGGCGGCTTCGTCAAGGCCGAGGTCGGCAAGTGGCGCGCCGTGGTGCAGAAGTCCGGCGCCCAGCTTGACTGA
ACCGCACAGGAAAACCAGCC

Downstream 100 bases:

>100_bases
ACGCGACGTTGCCGCGCGGCAAACGAAAAGGCGGCCATATGGCCGCCTTTCTTCATTGATTCCGGCTAGCTCATCACCCC
GGGATCATCCCCGGCAACAG

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MTQTSPGALAGIRVVDLSRILGGPYCGQILGDHGADVLKIEPPQGDDTRTWGPPFKDGVASYYFGLNRNKRVMRLDLTAE
ADREVLLALLAEADVLVENFKTGTMEKWGLGYDTLSARFPRLVHCRVSGFGADGPLGGLPGYDAAIQAMSGIMSINGEAD
GDPLRVGLPVVDMVTGLNAVIGVLLALQERARSGRGQFVEAALYDSGLSLLHPHAANWFMSGKTPQRTGNAHPNIYPYDT
VATATDPIFLAVGNDRQFRILCEHLRLPALADDERYATAGARSVNRVALKAELEARLCEFDGKVLADELVAAGVPCAPVL
SVADALQHPHTQHREMVVEMEGGYKGLGAPVKLSRTPATYRYAPLTEGDEFLD

Sequences:

>Translated_373_residues
MTQTSPGALAGIRVVDLSRILGGPYCGQILGDHGADVLKIEPPQGDDTRTWGPPFKDGVASYYFGLNRNKRVMRLDLTAE
ADREVLLALLAEADVLVENFKTGTMEKWGLGYDTLSARFPRLVHCRVSGFGADGPLGGLPGYDAAIQAMSGIMSINGEAD
GDPLRVGLPVVDMVTGLNAVIGVLLALQERARSGRGQFVEAALYDSGLSLLHPHAANWFMSGKTPQRTGNAHPNIYPYDT
VATATDPIFLAVGNDRQFRILCEHLRLPALADDERYATAGARSVNRVALKAELEARLCEFDGKVLADELVAAGVPCAPVL
SVADALQHPHTQHREMVVEMEGGYKGLGAPVKLSRTPATYRYAPLTEGDEFLD
>Mature_372_residues
TQTSPGALAGIRVVDLSRILGGPYCGQILGDHGADVLKIEPPQGDDTRTWGPPFKDGVASYYFGLNRNKRVMRLDLTAEA
DREVLLALLAEADVLVENFKTGTMEKWGLGYDTLSARFPRLVHCRVSGFGADGPLGGLPGYDAAIQAMSGIMSINGEADG
DPLRVGLPVVDMVTGLNAVIGVLLALQERARSGRGQFVEAALYDSGLSLLHPHAANWFMSGKTPQRTGNAHPNIYPYDTV
ATATDPIFLAVGNDRQFRILCEHLRLPALADDERYATAGARSVNRVALKAELEARLCEFDGKVLADELVAAGVPCAPVLS
VADALQHPHTQHREMVVEMEGGYKGLGAPVKLSRTPATYRYAPLTEGDEFLD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=342, Percent_Identity=35.9649122807018, Blast_Score=240, Evalue=2e-63,
Organism=Homo sapiens, GI300863124, Length=332, Percent_Identity=35.5421686746988, Blast_Score=229, Evalue=2e-60,
Organism=Homo sapiens, GI13376042, Length=324, Percent_Identity=31.7901234567901, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI300863126, Length=342, Percent_Identity=31.5789473684211, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI266456254, Length=345, Percent_Identity=29.5652173913043, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI42794625, Length=345, Percent_Identity=29.5652173913043, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458393, Length=249, Percent_Identity=32.9317269076305, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=32.9317269076305, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=38.3561643835616, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=38.3561643835616, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=41.8803418803419, Blast_Score=276, Evalue=1e-75,
Organism=Escherichia coli, GI1788717, Length=385, Percent_Identity=30.6493506493506, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1786222, Length=344, Percent_Identity=24.7093023255814, Blast_Score=85, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=214, Percent_Identity=28.5046728971963, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=265, Percent_Identity=27.1698113207547, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648431, Length=364, Percent_Identity=39.2857142857143, Blast_Score=237, Evalue=1e-62,
Organism=Drosophila melanogaster, GI24585488, Length=361, Percent_Identity=30.4709141274238, Blast_Score=115, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40079; Mature: 39948

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTSPGALAGIRVVDLSRILGGPYCGQILGDHGADVLKIEPPQGDDTRTWGPPFKDGVA
CCCCCCCCCCEEEEEEHHHHHCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
SYYFGLNRNKRVMRLDLTAEADREVLLALLAEADVLVENFKTGTMEKWGLGYDTLSARFP
HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHCCC
RLVHCRVSGFGADGPLGGLPGYDAAIQAMSGIMSINGEADGDPLRVGLPVVDMVTGLNAV
EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEECCCHHHHHHHHHHH
IGVLLALQERARSGRGQFVEAALYDSGLSLLHPHAANWFMSGKTPQRTGNAHPNIYPYDT
HHHHHHHHHHHCCCCCCEEEEHHHHCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
VATATDPIFLAVGNDRQFRILCEHLRLPALADDERYATAGARSVNRVALKAELEARLCEF
CCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCHHHEEEHHHHHHHHHHC
DGKVLADELVAAGVPCAPVLSVADALQHPHTQHREMVVEMEGGYKGLGAPVKLSRTPATY
CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEECCCCCCE
RYAPLTEGDEFLD
EECCCCCCHHHCC
>Mature Secondary Structure 
TQTSPGALAGIRVVDLSRILGGPYCGQILGDHGADVLKIEPPQGDDTRTWGPPFKDGVA
CCCCCCCCCEEEEEEHHHHHCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
SYYFGLNRNKRVMRLDLTAEADREVLLALLAEADVLVENFKTGTMEKWGLGYDTLSARFP
HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHCCC
RLVHCRVSGFGADGPLGGLPGYDAAIQAMSGIMSINGEADGDPLRVGLPVVDMVTGLNAV
EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCEEECCCHHHHHHHHHHH
IGVLLALQERARSGRGQFVEAALYDSGLSLLHPHAANWFMSGKTPQRTGNAHPNIYPYDT
HHHHHHHHHHHCCCCCCEEEEHHHHCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
VATATDPIFLAVGNDRQFRILCEHLRLPALADDERYATAGARSVNRVALKAELEARLCEF
CCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCHHHEEEHHHHHHHHHHC
DGKVLADELVAAGVPCAPVLSVADALQHPHTQHREMVVEMEGGYKGLGAPVKLSRTPATY
CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEECCCCCCE
RYAPLTEGDEFLD
EECCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]