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The map label for this gene is secF [H]

Identifier: 113478391

GI number: 113478391

Start: 7744449

End: 7745435

Strand: Reverse

Name: secF [H]

Synonym: Tery_5076

Alternate gene names: 113478391

Gene position: 7745435-7744449 (Counterclockwise)

Preceding gene: 113478392

Following gene: 113478390

Centisome position: 99.94

GC content: 35.87

Gene sequence:

>987_bases
ATGAAGATAAATATTATTAAACAGCGATCGCTTTGGTGGACAATTTCAGGGTCTATTATACTTTGTGGTTTAATTGCTAT
GGCCATTTCTTGGACTCGGCCAGATATTAGTGCCCCCTTACGTCCAAGTTTAGATTTTGTTGGCGGTACTCGGTTACAAC
TAGAATTAGATTGCACTATACCCAATAACTGTAATCAACCTATCAAAGTTGCTGCTGTCAGAGAAATAATAAGCAAGGAA
GGTTTCCCTAACAGTAAGATTCAAGTTGTAGGAGAAGAGAAAGAAGCTATTGACATACGCACAAAAACTTTAGATGTTGA
TACTCGAACTCAGTTAATAACTGCTTTAAGTACAGAATTTGGTAAATTTGACCCAGATTCTACTCAAATTGATACAGTCG
GTCCTACTTTAGGACGACAAATTTTTACCTCTGGACTATCAGCTCTACTGGTTGCTTTTTTTGGTATTACAATATATCTG
ACTTTTAGGTTTCAGTTTGACTATGCCGTATTTGCTTTTGTTGCCTTATTTCACGACATATTAGTTACCGTTGGCATTTT
CTCAATTCTTGGTTTGGTCGCCGGTGTGGAAGTAGATAGTTTATTTTTGGTTGCTCTATTAACTATTATTGGATTTTCTG
TTAATGATACAGTAGTAATTTACGACCGAGTTCGGGAAGTAATTAAGCGCTATCCAGGTAAACCAATTAATCAGATAGTT
GATGATGCCGTCAATCAAACTTTAACACGGTCAATTAATACCACTGTAACTACTTTATTACCTTTAGTTGGTATTCTTAT
ATTCGGTGGAGAAACTTTAAAATATTTGGCTTTGGCTTTAATTATTGGTTTTGTGGCAGGTTCTTACTCTAGTATATTTA
TTGCTAGTACGCTTTTAGCTTGGTGGCGTGAGCGTATTGGAGAATTTATCCCCAACCCCTTAGAAGAAAATTCACAGTTA
ATAGAAGGTCAAAAGGATACTGTTTAA

Upstream 100 bases:

>100_bases
ATCAATACAATTAATATTTCACTGGTAGTTGTTGGAACCACCATGTCTCTTTTCCTCTCCCAGTTGAAGTAGGGGTCAAA
GAAGCTATCAGGAGATTTTA

Downstream 100 bases:

>100_bases
ACATAAATACAGCTAAAGAACTCAAGCTCTGATAGAAGTTTTAATTAGAGCTTGTTGATTCATTATACAAGTGTTGGCAT
ATATAAGGTTAATGCTTTAT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKINIIKQRSLWWTISGSIILCGLIAMAISWTRPDISAPLRPSLDFVGGTRLQLELDCTIPNNCNQPIKVAAVREIISKE
GFPNSKIQVVGEEKEAIDIRTKTLDVDTRTQLITALSTEFGKFDPDSTQIDTVGPTLGRQIFTSGLSALLVAFFGITIYL
TFRFQFDYAVFAFVALFHDILVTVGIFSILGLVAGVEVDSLFLVALLTIIGFSVNDTVVIYDRVREVIKRYPGKPINQIV
DDAVNQTLTRSINTTVTTLLPLVGILIFGGETLKYLALALIIGFVAGSYSSIFIASTLLAWWRERIGEFIPNPLEENSQL
IEGQKDTV

Sequences:

>Translated_328_residues
MKINIIKQRSLWWTISGSIILCGLIAMAISWTRPDISAPLRPSLDFVGGTRLQLELDCTIPNNCNQPIKVAAVREIISKE
GFPNSKIQVVGEEKEAIDIRTKTLDVDTRTQLITALSTEFGKFDPDSTQIDTVGPTLGRQIFTSGLSALLVAFFGITIYL
TFRFQFDYAVFAFVALFHDILVTVGIFSILGLVAGVEVDSLFLVALLTIIGFSVNDTVVIYDRVREVIKRYPGKPINQIV
DDAVNQTLTRSINTTVTTLLPLVGILIFGGETLKYLALALIIGFVAGSYSSIFIASTLLAWWRERIGEFIPNPLEENSQL
IEGQKDTV
>Mature_328_residues
MKINIIKQRSLWWTISGSIILCGLIAMAISWTRPDISAPLRPSLDFVGGTRLQLELDCTIPNNCNQPIKVAAVREIISKE
GFPNSKIQVVGEEKEAIDIRTKTLDVDTRTQLITALSTEFGKFDPDSTQIDTVGPTLGRQIFTSGLSALLVAFFGITIYL
TFRFQFDYAVFAFVALFHDILVTVGIFSILGLVAGVEVDSLFLVALLTIIGFSVNDTVVIYDRVREVIKRYPGKPINQIV
DDAVNQTLTRSINTTVTTLLPLVGILIFGGETLKYLALALIIGFVAGSYSSIFIASTLLAWWRERIGEFIPNPLEENSQL
IEGQKDTV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=310, Percent_Identity=29.0322580645161, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 36194; Mature: 36194

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINIIKQRSLWWTISGSIILCGLIAMAISWTRPDISAPLRPSLDFVGGTRLQLELDCTI
CEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
PNNCNQPIKVAAVREIISKEGFPNSKIQVVGEEKEAIDIRTKTLDVDTRTQLITALSTEF
CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHHH
GKFDPDSTQIDTVGPTLGRQIFTSGLSALLVAFFGITIYLTFRFQFDYAVFAFVALFHDI
CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHH
LVTVGIFSILGLVAGVEVDSLFLVALLTIIGFSVNDTVVIYDRVREVIKRYPGKPINQIV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCHHHHHH
DDAVNQTLTRSINTTVTTLLPLVGILIFGGETLKYLALALIIGFVAGSYSSIFIASTLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
WWRERIGEFIPNPLEENSQLIEGQKDTV
HHHHHHHHHCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MKINIIKQRSLWWTISGSIILCGLIAMAISWTRPDISAPLRPSLDFVGGTRLQLELDCTI
CEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
PNNCNQPIKVAAVREIISKEGFPNSKIQVVGEEKEAIDIRTKTLDVDTRTQLITALSTEF
CCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHHH
GKFDPDSTQIDTVGPTLGRQIFTSGLSALLVAFFGITIYLTFRFQFDYAVFAFVALFHDI
CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHHHHHHHHHHH
LVTVGIFSILGLVAGVEVDSLFLVALLTIIGFSVNDTVVIYDRVREVIKRYPGKPINQIV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCHHHHHH
DDAVNQTLTRSINTTVTTLLPLVGILIFGGETLKYLALALIIGFVAGSYSSIFIASTLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
WWRERIGEFIPNPLEENSQLIEGQKDTV
HHHHHHHHHCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]