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The map label for this gene is secD [H]

Identifier: 113478392

GI number: 113478392

Start: 7745576

End: 7746961

Strand: Reverse

Name: secD [H]

Synonym: Tery_5077

Alternate gene names: 113478392

Gene position: 7746961-7745576 (Counterclockwise)

Preceding gene: 113478393

Following gene: 113478391

Centisome position: 99.96

GC content: 39.11

Gene sequence:

>1386_bases
ATGCGTAGACAAAATTCTTATATAGCTTTAATCTTAGTTCTAGTTATCGCATCAGTTACAGTATTAAGTCAAATTCCAAT
TCGTTTAGGATTAGATCTCAGAGGTGGGTCACAACTCACTATTCAACTACAAACCTCTGAGGAAATTCCCACCATTGACG
AACGTGTAATGGAAGGAGTCCTAAAAATAGTTGAAAATAGGGTTAATGCTTTAGGTGTATCAGAATCAGTAGTTCAATCT
TTAGGACAAGACCAAATTTTAGTTCAATTACCAGGAGTAAATGACCCTGAACAAGCAGAACGGGTTTTAGGAGGGACAGC
TCAACTTGACTTTCGAGAACAGTTACAAAGTACCGAGCAGCAGTTAGCAATTGAATATCAAGTACAGAGACAACTATTAG
TAGAGCAAGAATTACTTAAAAATAGTGAAGACCAAGAAGCTATAGAAAAAAATTTAGAATCTATCGAAAAAACAAATCAA
GCGATCGCCCAACTATTCAAAGAAGCAATTATTAAAGGCCAAGACCTCAGAGATGCTTTAGCGGAACCAGAAGCTCCTGG
GTCTAATAACTGGAATGTAGCTTTACGTTTCACCTCTGAAGGAGGACAAAAATTTGCTGAATTGACCAAAAATTTAGCAG
GAACTGGGCGTAGTATCGGTATTTTCCTAGACGATAAACTATTAAGCGCTCCTACGGTTAGTGTTGAATTTGCAGAGACA
GGAATTACTGGTGGTAGTGCAGTTATTCAAGGTACATTTACCCCTCAACAAGCTAATGATCTAGCTGTACAACTGCGGGG
TGGCGCTCTACCTGTTTCTGTAGAAATAGTTGAAAATCGAACTGTTGGGGCCACTTTGGGCAGAGATAGTATTCAGCGTA
GTGTCTACGCCGGAATAGGTGGTTTAATTCTGGTATTAATATTTATGGTTCTTTACTATAGACTACCTGGCGTCATTGCT
GACGTAGCCCTAGTTATTTATGCCCTATTTACCATTGCTAGTTTTTCCATCTTGGGGGTTACTTTAACATTGCCAGGAAT
TGCTGGTTTTATCCTGAGTATTGGTATGGCAGTAGACGCCAACGTTTTAATTTTTGAACGGACAAGGGAAGAGTTACGAG
CTGGCAAAACTTTATATCGTTCTGTAGAGTCTGGCTTTTATCGGGCTTTTTCTAGTATTCTAGATGGTAATGTCACAACT
TTGATTGCTTGCGTAGCACTATTCTGGTTAGGAACTGGTTTAGTCAAGGGTTTCGCCCTAACTTTGGGAATTGGTGTAGC
AATAAGTATGTTTACCGCCCTGACTTGTAGTCGAACTTTGATGTTTTGGACAATTGGATTTTCTCAATTCCGTAAACCAG
AATTATTCTGTCCAGAACTAAAGTAA

Upstream 100 bases:

>100_bases
TCAAGTTTATAAAAATATTTATAAGTGAATTTTTAATTTGATGAAATTAGTATTAATTATCAATACAATCCTCTAAATGC
TACTTTAATTTAATTAAATT

Downstream 100 bases:

>100_bases
CCTCAAATATTGCCCACTCATCTATAAAACTCACATGAATATCAATACAATTAATATTTCACTGGTAGTTGTTGGAACCA
CCATGTCTCTTTTCCTCTCC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MRRQNSYIALILVLVIASVTVLSQIPIRLGLDLRGGSQLTIQLQTSEEIPTIDERVMEGVLKIVENRVNALGVSESVVQS
LGQDQILVQLPGVNDPEQAERVLGGTAQLDFREQLQSTEQQLAIEYQVQRQLLVEQELLKNSEDQEAIEKNLESIEKTNQ
AIAQLFKEAIIKGQDLRDALAEPEAPGSNNWNVALRFTSEGGQKFAELTKNLAGTGRSIGIFLDDKLLSAPTVSVEFAET
GITGGSAVIQGTFTPQQANDLAVQLRGGALPVSVEIVENRTVGATLGRDSIQRSVYAGIGGLILVLIFMVLYYRLPGVIA
DVALVIYALFTIASFSILGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGKTLYRSVESGFYRAFSSILDGNVTT
LIACVALFWLGTGLVKGFALTLGIGVAISMFTALTCSRTLMFWTIGFSQFRKPELFCPELK

Sequences:

>Translated_461_residues
MRRQNSYIALILVLVIASVTVLSQIPIRLGLDLRGGSQLTIQLQTSEEIPTIDERVMEGVLKIVENRVNALGVSESVVQS
LGQDQILVQLPGVNDPEQAERVLGGTAQLDFREQLQSTEQQLAIEYQVQRQLLVEQELLKNSEDQEAIEKNLESIEKTNQ
AIAQLFKEAIIKGQDLRDALAEPEAPGSNNWNVALRFTSEGGQKFAELTKNLAGTGRSIGIFLDDKLLSAPTVSVEFAET
GITGGSAVIQGTFTPQQANDLAVQLRGGALPVSVEIVENRTVGATLGRDSIQRSVYAGIGGLILVLIFMVLYYRLPGVIA
DVALVIYALFTIASFSILGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGKTLYRSVESGFYRAFSSILDGNVTT
LIACVALFWLGTGLVKGFALTLGIGVAISMFTALTCSRTLMFWTIGFSQFRKPELFCPELK
>Mature_461_residues
MRRQNSYIALILVLVIASVTVLSQIPIRLGLDLRGGSQLTIQLQTSEEIPTIDERVMEGVLKIVENRVNALGVSESVVQS
LGQDQILVQLPGVNDPEQAERVLGGTAQLDFREQLQSTEQQLAIEYQVQRQLLVEQELLKNSEDQEAIEKNLESIEKTNQ
AIAQLFKEAIIKGQDLRDALAEPEAPGSNNWNVALRFTSEGGQKFAELTKNLAGTGRSIGIFLDDKLLSAPTVSVEFAET
GITGGSAVIQGTFTPQQANDLAVQLRGGALPVSVEIVENRTVGATLGRDSIQRSVYAGIGGLILVLIFMVLYYRLPGVIA
DVALVIYALFTIASFSILGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGKTLYRSVESGFYRAFSSILDGNVTT
LIACVALFWLGTGLVKGFALTLGIGVAISMFTALTCSRTLMFWTIGFSQFRKPELFCPELK

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=417, Percent_Identity=34.5323741007194, Blast_Score=228, Evalue=7e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 50045; Mature: 50045

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00359 RIBOSOMAL_L11

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRQNSYIALILVLVIASVTVLSQIPIRLGLDLRGGSQLTIQLQTSEEIPTIDERVMEGV
CCCCCHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCEEEEEEECCCCCCCHHHHHHHHH
LKIVENRVNALGVSESVVQSLGQDQILVQLPGVNDPEQAERVLGGTAQLDFREQLQSTEQ
HHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
QLAIEYQVQRQLLVEQELLKNSEDQEAIEKNLESIEKTNQAIAQLFKEAIIKGQDLRDAL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AEPEAPGSNNWNVALRFTSEGGQKFAELTKNLAGTGRSIGIFLDDKLLSAPTVSVEFAET
CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEHHC
GITGGSAVIQGTFTPQQANDLAVQLRGGALPVSVEIVENRTVGATLGRDSIQRSVYAGIG
CCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
GLILVLIFMVLYYRLPGVIADVALVIYALFTIASFSILGVTLTLPGIAGFILSIGMAVDA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NVLIFERTREELRAGKTLYRSVESGFYRAFSSILDGNVTTLIACVALFWLGTGLVKGFAL
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
TLGIGVAISMFTALTCSRTLMFWTIGFSQFRKPELFCPELK
HHHHHHHHHHHHHHHHHHHHHHEEECHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRRQNSYIALILVLVIASVTVLSQIPIRLGLDLRGGSQLTIQLQTSEEIPTIDERVMEGV
CCCCCHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCEEEEEEECCCCCCCHHHHHHHHH
LKIVENRVNALGVSESVVQSLGQDQILVQLPGVNDPEQAERVLGGTAQLDFREQLQSTEQ
HHHHHHHHHHCCCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
QLAIEYQVQRQLLVEQELLKNSEDQEAIEKNLESIEKTNQAIAQLFKEAIIKGQDLRDAL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AEPEAPGSNNWNVALRFTSEGGQKFAELTKNLAGTGRSIGIFLDDKLLSAPTVSVEFAET
CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEHHC
GITGGSAVIQGTFTPQQANDLAVQLRGGALPVSVEIVENRTVGATLGRDSIQRSVYAGIG
CCCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
GLILVLIFMVLYYRLPGVIADVALVIYALFTIASFSILGVTLTLPGIAGFILSIGMAVDA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NVLIFERTREELRAGKTLYRSVESGFYRAFSSILDGNVTTLIACVALFWLGTGLVKGFAL
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
TLGIGVAISMFTALTCSRTLMFWTIGFSQFRKPELFCPELK
HHHHHHHHHHHHHHHHHHHHHHEEECHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]