| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478344
Identifier: 113478344
GI number: 113478344
Start: 7673102
End: 7673665
Strand: Reverse
Name: 113478344
Synonym: Tery_5020
Alternate gene names: NA
Gene position: 7673665-7673102 (Counterclockwise)
Preceding gene: 113478345
Following gene: 113478343
Centisome position: 99.01
GC content: 38.12
Gene sequence:
>564_bases ATGGCACGCACAAGTTACTACAAAGACTTAGCAGCAGATTACTCTAGAGCCGTTCCAGTAGCTACTGATGTTGCTAAAGA GATGATTGCTTTGGCAGAAAAGATATGCAAGATGAAAGAAGCAACATTACCAACGATCGGAGATGACTACACATTAGAAC AGATAGAAAAAGAAAATAAAGATTGGTGGCCTACTCATTGTGAAGCTTTGAGACAAGGACGCGGTGATATTTTAACGGAT GAGTATCGGAATGATTTAGTTTATTTTTGCCAAGATGGACCTTATCAGGGTCTAGAACAACAAAAAGAACGGGAAAAGCA TTGGTGGGCATTAATTTCTCAACCAGGAGTTATTATGACTTGGCCAATTGTCATGTTTTATGGAGAACATACATATTTTG AATGGAAGAGTGTGGATCTTGAAACTAACGAAACTATTGCTAAGGGAAATGTGACTTGGGTACGTCGTGGTCATAGAGGT GGTTGTTATTTGAAAACTGAACAATTAACGTTTTACCGCGATGTGTTTGCTGATCAATCACTATTGAAGTTAATTACGAC ATAA
Upstream 100 bases:
>100_bases CAATCAACTACAAGATGATATAGTTGATCTAATGTTGAAGAATCAGTTGACTGATTAATTTTTAAGTTTTCCAAGTAAAA AAACAATTAACAGGGATATT
Downstream 100 bases:
>100_bases GACAAACATTGATTGTCTTAAATATTTAAGAATGTTAACTTTTACATTCCTTGAATTGTCATAAGGTAGACTGGAAAACA TTATTACTTGTTTATTACTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MARTSYYKDLAADYSRAVPVATDVAKEMIALAEKICKMKEATLPTIGDDYTLEQIEKENKDWWPTHCEALRQGRGDILTD EYRNDLVYFCQDGPYQGLEQQKEREKHWWALISQPGVIMTWPIVMFYGEHTYFEWKSVDLETNETIAKGNVTWVRRGHRG GCYLKTEQLTFYRDVFADQSLLKLITT
Sequences:
>Translated_187_residues MARTSYYKDLAADYSRAVPVATDVAKEMIALAEKICKMKEATLPTIGDDYTLEQIEKENKDWWPTHCEALRQGRGDILTD EYRNDLVYFCQDGPYQGLEQQKEREKHWWALISQPGVIMTWPIVMFYGEHTYFEWKSVDLETNETIAKGNVTWVRRGHRG GCYLKTEQLTFYRDVFADQSLLKLITT >Mature_186_residues ARTSYYKDLAADYSRAVPVATDVAKEMIALAEKICKMKEATLPTIGDDYTLEQIEKENKDWWPTHCEALRQGRGDILTDE YRNDLVYFCQDGPYQGLEQQKEREKHWWALISQPGVIMTWPIVMFYGEHTYFEWKSVDLETNETIAKGNVTWVRRGHRGG CYLKTEQLTFYRDVFADQSLLKLITT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21877; Mature: 21746
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTSYYKDLAADYSRAVPVATDVAKEMIALAEKICKMKEATLPTIGDDYTLEQIEKENK CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC DWWPTHCEALRQGRGDILTDEYRNDLVYFCQDGPYQGLEQQKEREKHWWALISQPGVIMT CCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE WPIVMFYGEHTYFEWKSVDLETNETIAKGNVTWVRRGHRGGCYLKTEQLTFYRDVFADQS EHEEEEECCCCEEEEEECCCCCCCEEECCCEEEEEECCCCCEEEEECCHHHHHHHHCCHH LLKLITT HHHHHCC >Mature Secondary Structure ARTSYYKDLAADYSRAVPVATDVAKEMIALAEKICKMKEATLPTIGDDYTLEQIEKENK CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC DWWPTHCEALRQGRGDILTDEYRNDLVYFCQDGPYQGLEQQKEREKHWWALISQPGVIMT CCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE WPIVMFYGEHTYFEWKSVDLETNETIAKGNVTWVRRGHRGGCYLKTEQLTFYRDVFADQS EHEEEEECCCCEEEEEECCCCCCCEEECCCEEEEEECCCCCEEEEECCHHHHHHHHCCHH LLKLITT HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA