The gene/protein map for NC_008312 is currently unavailable.
Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113478344

Identifier: 113478344

GI number: 113478344

Start: 7673102

End: 7673665

Strand: Reverse

Name: 113478344

Synonym: Tery_5020

Alternate gene names: NA

Gene position: 7673665-7673102 (Counterclockwise)

Preceding gene: 113478345

Following gene: 113478343

Centisome position: 99.01

GC content: 38.12

Gene sequence:

>564_bases
ATGGCACGCACAAGTTACTACAAAGACTTAGCAGCAGATTACTCTAGAGCCGTTCCAGTAGCTACTGATGTTGCTAAAGA
GATGATTGCTTTGGCAGAAAAGATATGCAAGATGAAAGAAGCAACATTACCAACGATCGGAGATGACTACACATTAGAAC
AGATAGAAAAAGAAAATAAAGATTGGTGGCCTACTCATTGTGAAGCTTTGAGACAAGGACGCGGTGATATTTTAACGGAT
GAGTATCGGAATGATTTAGTTTATTTTTGCCAAGATGGACCTTATCAGGGTCTAGAACAACAAAAAGAACGGGAAAAGCA
TTGGTGGGCATTAATTTCTCAACCAGGAGTTATTATGACTTGGCCAATTGTCATGTTTTATGGAGAACATACATATTTTG
AATGGAAGAGTGTGGATCTTGAAACTAACGAAACTATTGCTAAGGGAAATGTGACTTGGGTACGTCGTGGTCATAGAGGT
GGTTGTTATTTGAAAACTGAACAATTAACGTTTTACCGCGATGTGTTTGCTGATCAATCACTATTGAAGTTAATTACGAC
ATAA

Upstream 100 bases:

>100_bases
CAATCAACTACAAGATGATATAGTTGATCTAATGTTGAAGAATCAGTTGACTGATTAATTTTTAAGTTTTCCAAGTAAAA
AAACAATTAACAGGGATATT

Downstream 100 bases:

>100_bases
GACAAACATTGATTGTCTTAAATATTTAAGAATGTTAACTTTTACATTCCTTGAATTGTCATAAGGTAGACTGGAAAACA
TTATTACTTGTTTATTACTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MARTSYYKDLAADYSRAVPVATDVAKEMIALAEKICKMKEATLPTIGDDYTLEQIEKENKDWWPTHCEALRQGRGDILTD
EYRNDLVYFCQDGPYQGLEQQKEREKHWWALISQPGVIMTWPIVMFYGEHTYFEWKSVDLETNETIAKGNVTWVRRGHRG
GCYLKTEQLTFYRDVFADQSLLKLITT

Sequences:

>Translated_187_residues
MARTSYYKDLAADYSRAVPVATDVAKEMIALAEKICKMKEATLPTIGDDYTLEQIEKENKDWWPTHCEALRQGRGDILTD
EYRNDLVYFCQDGPYQGLEQQKEREKHWWALISQPGVIMTWPIVMFYGEHTYFEWKSVDLETNETIAKGNVTWVRRGHRG
GCYLKTEQLTFYRDVFADQSLLKLITT
>Mature_186_residues
ARTSYYKDLAADYSRAVPVATDVAKEMIALAEKICKMKEATLPTIGDDYTLEQIEKENKDWWPTHCEALRQGRGDILTDE
YRNDLVYFCQDGPYQGLEQQKEREKHWWALISQPGVIMTWPIVMFYGEHTYFEWKSVDLETNETIAKGNVTWVRRGHRGG
CYLKTEQLTFYRDVFADQSLLKLITT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21877; Mature: 21746

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTSYYKDLAADYSRAVPVATDVAKEMIALAEKICKMKEATLPTIGDDYTLEQIEKENK
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
DWWPTHCEALRQGRGDILTDEYRNDLVYFCQDGPYQGLEQQKEREKHWWALISQPGVIMT
CCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
WPIVMFYGEHTYFEWKSVDLETNETIAKGNVTWVRRGHRGGCYLKTEQLTFYRDVFADQS
EHEEEEECCCCEEEEEECCCCCCCEEECCCEEEEEECCCCCEEEEECCHHHHHHHHCCHH
LLKLITT
HHHHHCC
>Mature Secondary Structure 
ARTSYYKDLAADYSRAVPVATDVAKEMIALAEKICKMKEATLPTIGDDYTLEQIEKENK
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
DWWPTHCEALRQGRGDILTDEYRNDLVYFCQDGPYQGLEQQKEREKHWWALISQPGVIMT
CCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
WPIVMFYGEHTYFEWKSVDLETNETIAKGNVTWVRRGHRGGCYLKTEQLTFYRDVFADQS
EHEEEEECCCCEEEEEECCCCCCCEEECCCEEEEEECCCCCEEEEECCHHHHHHHHCCHH
LLKLITT
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA