| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478286
Identifier: 113478286
GI number: 113478286
Start: 7563977
End: 7564768
Strand: Reverse
Name: 113478286
Synonym: Tery_4960
Alternate gene names: NA
Gene position: 7564768-7563977 (Counterclockwise)
Preceding gene: 113478287
Following gene: 113478285
Centisome position: 97.61
GC content: 37.12
Gene sequence:
>792_bases ATGACTATTACAGATAATGATGCTATTAATATTCCTATCCCTATGGAGGCTCATAGTTCTGCTCAAAAGTTTGCGGCTCA ACAACCTAATTCGGAAAAAAAGACTCAAGTTTATCTGAATACTTTGGTGGTTTATGCTGTAGATAATTTCCTGAAAATGA TGGATATTAAAACTGATTTGGAGGCTTCTGATTTTTGGAATCCGGCAATCCGTTTTTATCAGAATGTGGCGGATTTGGTT GTTGTTGATCGAGGTAAGTTGGAATGTCGTTTTGTATTACCTGAACAGGATAAAATAGAGTTGCCCCTAGAGGTTTTTGA GGATAGAATTGGTTATATTTTGGTTCGGTTAGATCAGAGTTTACAATTTGGGGAAATATTGGGGTTTTTGCCTATGGATG ATCCGGAGGAAATGCCGGAAGAGTTGGAGGTTGATGAGTTGGAACATATAGAGGTTTTGTTTGAATGTTTACAACGTTTA GAGTCTGCTAATTCTGCTTTTTCTGCTGAGGTTGACCCGGTTTTTTCTAGGGTTAAAGATAGGTTGGCGATGGATAATTT TACTAATATTATTGCTCAGTTGGAGTGGATATATCGGACTAAAAAAAGTTATGAGTGGCGAGCTGCTACTAAGAGTTTGT TTGTGACATATTTGGATGATGAGAAAGAAGAATTAGCTAGTAATTTTATGGCAAATCTCAAGGAGGATGATGTTCAGGAT AGGGATGTTAAGTTGAGTGACTTGGCAGAAGATTTGATTAATAAGTTGGTGAAAATTTGGGAGGGGGAATAA
Upstream 100 bases:
>100_bases AAGAATTAAAGGTACCTCTGGGAACTTTGACGGCTCATTGGAACAGAAAGTGTAAACCACTTTTGCGGAAAATTTATCAA GAACTTTCAGGAGAAAAATA
Downstream 100 bases:
>100_bases GTCAAACTTTAAAAGTTGGATTTTATTGCTCTCAAATGTTTATTTTGTAAAATGTTTTTGTTGCGAGGGGGAATGTCTTG AGGGCTACTACTGGGAAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MTITDNDAINIPIPMEAHSSAQKFAAQQPNSEKKTQVYLNTLVVYAVDNFLKMMDIKTDLEASDFWNPAIRFYQNVADLV VVDRGKLECRFVLPEQDKIELPLEVFEDRIGYILVRLDQSLQFGEILGFLPMDDPEEMPEELEVDELEHIEVLFECLQRL ESANSAFSAEVDPVFSRVKDRLAMDNFTNIIAQLEWIYRTKKSYEWRAATKSLFVTYLDDEKEELASNFMANLKEDDVQD RDVKLSDLAEDLINKLVKIWEGE
Sequences:
>Translated_263_residues MTITDNDAINIPIPMEAHSSAQKFAAQQPNSEKKTQVYLNTLVVYAVDNFLKMMDIKTDLEASDFWNPAIRFYQNVADLV VVDRGKLECRFVLPEQDKIELPLEVFEDRIGYILVRLDQSLQFGEILGFLPMDDPEEMPEELEVDELEHIEVLFECLQRL ESANSAFSAEVDPVFSRVKDRLAMDNFTNIIAQLEWIYRTKKSYEWRAATKSLFVTYLDDEKEELASNFMANLKEDDVQD RDVKLSDLAEDLINKLVKIWEGE >Mature_262_residues TITDNDAINIPIPMEAHSSAQKFAAQQPNSEKKTQVYLNTLVVYAVDNFLKMMDIKTDLEASDFWNPAIRFYQNVADLVV VDRGKLECRFVLPEQDKIELPLEVFEDRIGYILVRLDQSLQFGEILGFLPMDDPEEMPEELEVDELEHIEVLFECLQRLE SANSAFSAEVDPVFSRVKDRLAMDNFTNIIAQLEWIYRTKKSYEWRAATKSLFVTYLDDEKEELASNFMANLKEDDVQDR DVKLSDLAEDLINKLVKIWEGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30503; Mature: 30372
Theoretical pI: Translated: 4.08; Mature: 4.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTITDNDAINIPIPMEAHSSAQKFAAQQPNSEKKTQVYLNTLVVYAVDNFLKMMDIKTDL CCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC EASDFWNPAIRFYQNVADLVVVDRGKLECRFVLPEQDKIELPLEVFEDRIGYILVRLDQS CHHHCCHHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHCEEEEEECCC LQFGEILGFLPMDDPEEMPEELEVDELEHIEVLFECLQRLESANSAFSAEVDPVFSRVKD CCHHHHHCCCCCCCHHHCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH RLAMDNFTNIIAQLEWIYRTKKSYEWRAATKSLFVTYLDDEKEELASNFMANLKEDDVQD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECCCHHHHHHHHHHHCCCCCCCC RDVKLSDLAEDLINKLVKIWEGE CCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TITDNDAINIPIPMEAHSSAQKFAAQQPNSEKKTQVYLNTLVVYAVDNFLKMMDIKTDL CCCCCCEEECCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC EASDFWNPAIRFYQNVADLVVVDRGKLECRFVLPEQDKIELPLEVFEDRIGYILVRLDQS CHHHCCHHHHHHHHHHHHEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHCEEEEEECCC LQFGEILGFLPMDDPEEMPEELEVDELEHIEVLFECLQRLESANSAFSAEVDPVFSRVKD CCHHHHHCCCCCCCHHHCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH RLAMDNFTNIIAQLEWIYRTKKSYEWRAATKSLFVTYLDDEKEELASNFMANLKEDDVQD HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEEEEECCCHHHHHHHHHHHCCCCCCCC RDVKLSDLAEDLINKLVKIWEGE CCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA