| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478172
Identifier: 113478172
GI number: 113478172
Start: 7401163
End: 7402356
Strand: Reverse
Name: 113478172
Synonym: Tery_4813
Alternate gene names: NA
Gene position: 7402356-7401163 (Counterclockwise)
Preceding gene: 113478173
Following gene: 113478169
Centisome position: 95.51
GC content: 30.9
Gene sequence:
>1194_bases ATGAATCAACCACAACTAACTATCAGCAATAATAATGAAAATTTATGTACAATTATCTATAAAAGCATATCTGAATCTCA AAATAAACGGATTACTTTTGCTGAATATATGGATTTAGTTTTATACCATCCCCAATATGGTTATTATGCAACTCATCCTG TAAATATTGGCAAACAAGGAGACTTTTTAACCTCTCCTCATTGGGGTAGTGACTTTGGAGAATTATTAGCAGAACAATTT CTACAAATGTGGCATATTTTGCAAAGGCCTAATAATTTTACTATAGTAGAAATGGGTGCTGGTCAGGGAATTTTAGCAGA GCAAATTTTAGGTTATCTTAAACAAAAACATTTAGATTTTTTCCAAACAGTTGAATATCTAATTGTTGAAAAATCAGAAG TTTTAAAAGTACAACAAAAACAAATTTTACAGTCATATCAAGTGAGATGGAGTGACTGGGATAAAATTTCCCATAGTTCA ATTACAGGTTGTTTCTTTTCTAATGAGTTGGTAGATGCTTTTCCAGTGCATAAGTTTAGAATAGAAGAACGGGAAATTAA AGAAATTTATGTGTCTTCTAACTCTCAAGGAAAGTTTGTAGAAATAACTGATAAAATTTCAACTCCTGAAATTGCTGAAT ATTTTAATTTAGTGGATATAGATTTACTCTCATTTGTTGATGTTGAGGGTTATCAAAGTGAAGTAAATTTACAGGCTTTA GATTGGATAAAAATTGTTAGTAATAAGTTGCTAAAGGGTTATTTATTAACTATTGATTATGGTTATCAAGCAGTACGCTA TTATAATCCTGTTAGAAAAGAGGGAACTCTACAATGTTATTATCAACATCATCGAAATAATGACCCTTATTGGAATGTTG GGCGACAAGATATTACTGCTCATGTTGATTTTACTGCTTTGGAAAAACAGGGAAATTTATTAGACTTAGAAACTCTAGGT TTTACTAAACAAGGTTTATTTTTAATGGCTTTAGGTTTAGGAGATAGATTAAATGAATTATCAAATAATCAAGGTTTTTC TGTTGAAGAAGTTTTCCGACGTAGGGAAGCATTACATTCATTAATAGACCCAATTGGGTTAGGAAATTTTGGGGTTTTGG TGCAGAGCAAAAGTTTGAGTGAGGAAGAAAAAAAGCAAACTTTGAAAGGTTTAAGCATGCCTCCTATGGGTTAA
Upstream 100 bases:
>100_bases ATAAATTTCAGATACAGTTAGATAATAAAACTAACTATTCCTATTTATAGGAAAGAAAAAAAAATTAATTTTTATTCTTT CTTAATTTTTCCTTAAATTT
Downstream 100 bases:
>100_bases TAATTTTAGAATTCATAAGTTGTTTTTGCAATGGGGGTTTTAAGCAGAAAAAGAGGGGGAAAATCCAGGGCAAACGCATC TAATTTTTTTGACAAATGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MNQPQLTISNNNENLCTIIYKSISESQNKRITFAEYMDLVLYHPQYGYYATHPVNIGKQGDFLTSPHWGSDFGELLAEQF LQMWHILQRPNNFTIVEMGAGQGILAEQILGYLKQKHLDFFQTVEYLIVEKSEVLKVQQKQILQSYQVRWSDWDKISHSS ITGCFFSNELVDAFPVHKFRIEEREIKEIYVSSNSQGKFVEITDKISTPEIAEYFNLVDIDLLSFVDVEGYQSEVNLQAL DWIKIVSNKLLKGYLLTIDYGYQAVRYYNPVRKEGTLQCYYQHHRNNDPYWNVGRQDITAHVDFTALEKQGNLLDLETLG FTKQGLFLMALGLGDRLNELSNNQGFSVEEVFRRREALHSLIDPIGLGNFGVLVQSKSLSEEEKKQTLKGLSMPPMG
Sequences:
>Translated_397_residues MNQPQLTISNNNENLCTIIYKSISESQNKRITFAEYMDLVLYHPQYGYYATHPVNIGKQGDFLTSPHWGSDFGELLAEQF LQMWHILQRPNNFTIVEMGAGQGILAEQILGYLKQKHLDFFQTVEYLIVEKSEVLKVQQKQILQSYQVRWSDWDKISHSS ITGCFFSNELVDAFPVHKFRIEEREIKEIYVSSNSQGKFVEITDKISTPEIAEYFNLVDIDLLSFVDVEGYQSEVNLQAL DWIKIVSNKLLKGYLLTIDYGYQAVRYYNPVRKEGTLQCYYQHHRNNDPYWNVGRQDITAHVDFTALEKQGNLLDLETLG FTKQGLFLMALGLGDRLNELSNNQGFSVEEVFRRREALHSLIDPIGLGNFGVLVQSKSLSEEEKKQTLKGLSMPPMG >Mature_397_residues MNQPQLTISNNNENLCTIIYKSISESQNKRITFAEYMDLVLYHPQYGYYATHPVNIGKQGDFLTSPHWGSDFGELLAEQF LQMWHILQRPNNFTIVEMGAGQGILAEQILGYLKQKHLDFFQTVEYLIVEKSEVLKVQQKQILQSYQVRWSDWDKISHSS ITGCFFSNELVDAFPVHKFRIEEREIKEIYVSSNSQGKFVEITDKISTPEIAEYFNLVDIDLLSFVDVEGYQSEVNLQAL DWIKIVSNKLLKGYLLTIDYGYQAVRYYNPVRKEGTLQCYYQHHRNNDPYWNVGRQDITAHVDFTALEKQGNLLDLETLG FTKQGLFLMALGLGDRLNELSNNQGFSVEEVFRRREALHSLIDPIGLGNFGVLVQSKSLSEEEKKQTLKGLSMPPMG
Specific function: Unknown
COG id: COG1565
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21396487, Length=350, Percent_Identity=28, Blast_Score=90, Evalue=4e-18, Organism=Drosophila melanogaster, GI24645885, Length=373, Percent_Identity=27.3458445040214, Blast_Score=105, Evalue=5e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45784; Mature: 45784
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQPQLTISNNNENLCTIIYKSISESQNKRITFAEYMDLVLYHPQYGYYATHPVNIGKQG CCCCCEEEECCCCCEEEEEEHHHCCCCCCEEEHHHHHHHHEECCCCCCEEECCCCCCCCC DFLTSPHWGSDFGELLAEQFLQMWHILQRPNNFTIVEMGAGQGILAEQILGYLKQKHLDF CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH FQTVEYLIVEKSEVLKVQQKQILQSYQVRWSDWDKISHSSITGCFFSNELVDAFPVHKFR HHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHCCCHHEE IEEREIKEIYVSSNSQGKFVEITDKISTPEIAEYFNLVDIDLLSFVDVEGYQSEVNLQAL CCHHHHHEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH DWIKIVSNKLLKGYLLTIDYGYQAVRYYNPVRKEGTLQCYYQHHRNNDPYWNVGRQDITA HHHHHHHHHHHCEEEEEEECCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEE HVDFTALEKQGNLLDLETLGFTKQGLFLMALGLGDRLNELSNNQGFSVEEVFRRREALHS EEEEEEECCCCCEEEEHHCCCCCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHH LIDPIGLGNFGVLVQSKSLSEEEKKQTLKGLSMPPMG HHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNQPQLTISNNNENLCTIIYKSISESQNKRITFAEYMDLVLYHPQYGYYATHPVNIGKQG CCCCCEEEECCCCCEEEEEEHHHCCCCCCEEEHHHHHHHHEECCCCCCEEECCCCCCCCC DFLTSPHWGSDFGELLAEQFLQMWHILQRPNNFTIVEMGAGQGILAEQILGYLKQKHLDF CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH FQTVEYLIVEKSEVLKVQQKQILQSYQVRWSDWDKISHSSITGCFFSNELVDAFPVHKFR HHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHCCCHHEE IEEREIKEIYVSSNSQGKFVEITDKISTPEIAEYFNLVDIDLLSFVDVEGYQSEVNLQAL CCHHHHHEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH DWIKIVSNKLLKGYLLTIDYGYQAVRYYNPVRKEGTLQCYYQHHRNNDPYWNVGRQDITA HHHHHHHHHHHCEEEEEEECCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEE HVDFTALEKQGNLLDLETLGFTKQGLFLMALGLGDRLNELSNNQGFSVEEVFRRREALHS EEEEEEECCCCCEEEEHHCCCCCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHH LIDPIGLGNFGVLVQSKSLSEEEKKQTLKGLSMPPMG HHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA