| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478173
Identifier: 113478173
GI number: 113478173
Start: 7402563
End: 7403309
Strand: Reverse
Name: 113478173
Synonym: Tery_4814
Alternate gene names: NA
Gene position: 7403309-7402563 (Counterclockwise)
Preceding gene: 113478174
Following gene: 113478172
Centisome position: 95.53
GC content: 29.72
Gene sequence:
>747_bases ATGAGTAGAACACTAGTATTTATTTATGGTATAGTTTGTTATTTAATATCATTGATGACTTTTCTGTATACCATTGGTTT TGTGGGCAATTTAATAGTACCAAAAACACTAGATTTAAACTTAGATGGTTCTCTGATTAAGGGGTTATTAATTGATATTT TATTAATCTTTTTGTTTGGTGTTCAACATAGTATTATGGCACGTCAAAGTTTCAAAAAATGGTGGACTAAAATAATTCCA GAAGTTATAGAACGTAGCACTTATGTTTTGATGGCAAGCCTAGTATTATTACTGTTATGTTGGCAATGGTCTTCTTTTGG TGGAATTATCTGGAATATACAAAACCCAATAATTTTTAACGTTATTTATGGCATTTTTGCCGTGGGATGGTTAATTGTTT TTCTTAGCACTTTTATGATTAACCATTTTGATTTATTCGGCTTGCGACAAGTATATTTATATTGGCGTGGTCAGGAATAT GAAGATTTAGAATTCAGAAATCCAGGGTTTTATAAATATATTCGCCATCCAATTATGTTAGGTTTTCTTATTGCTTTTTG GGCAACTCCATTAATGACAAGTTCTCATCTAGTTTTTGCTATAGGTATCACAATTTATGTATTAATAGGTATTAAATTAG AAGAGGTAGATATGATTTCTATTTATGGAAATTTATATCAGGAATATCGCCAGCAAGTTTCTATGTTAATTCCTGTGCCC AAAATAAAATTTATCAAGCATAAATAG
Upstream 100 bases:
>100_bases ATTTAGTATTACTTAAAAATTTAAATTTTACCATTGGTATGAAGCTGCTTTAATTACTCAAATAATTTTATCAAAGTTAT GGAGATTTTGTAGGATAAAA
Downstream 100 bases:
>100_bases ATAAAAAAATTAGGGTTATTCCTGATTTTTTCTCGGGACTAGATATAGATATGTAGATATGAATATATTCTATATAGATA GCAAAAAACATTGAGTGAAT
Product: putative integral membrane protein
Products: NA
Alternate protein names: Conserved Integral Membrane Protein; Conserved Membrane Protein; S-Isoprenylcysteine O-Methyltransferase; Protein-S-Isoprenylcysteine Methyltransferase
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MSRTLVFIYGIVCYLISLMTFLYTIGFVGNLIVPKTLDLNLDGSLIKGLLIDILLIFLFGVQHSIMARQSFKKWWTKIIP EVIERSTYVLMASLVLLLLCWQWSSFGGIIWNIQNPIIFNVIYGIFAVGWLIVFLSTFMINHFDLFGLRQVYLYWRGQEY EDLEFRNPGFYKYIRHPIMLGFLIAFWATPLMTSSHLVFAIGITIYVLIGIKLEEVDMISIYGNLYQEYRQQVSMLIPVP KIKFIKHK
Sequences:
>Translated_248_residues MSRTLVFIYGIVCYLISLMTFLYTIGFVGNLIVPKTLDLNLDGSLIKGLLIDILLIFLFGVQHSIMARQSFKKWWTKIIP EVIERSTYVLMASLVLLLLCWQWSSFGGIIWNIQNPIIFNVIYGIFAVGWLIVFLSTFMINHFDLFGLRQVYLYWRGQEY EDLEFRNPGFYKYIRHPIMLGFLIAFWATPLMTSSHLVFAIGITIYVLIGIKLEEVDMISIYGNLYQEYRQQVSMLIPVP KIKFIKHK >Mature_247_residues SRTLVFIYGIVCYLISLMTFLYTIGFVGNLIVPKTLDLNLDGSLIKGLLIDILLIFLFGVQHSIMARQSFKKWWTKIIPE VIERSTYVLMASLVLLLLCWQWSSFGGIIWNIQNPIIFNVIYGIFAVGWLIVFLSTFMINHFDLFGLRQVYLYWRGQEYE DLEFRNPGFYKYIRHPIMLGFLIAFWATPLMTSSHLVFAIGITIYVLIGIKLEEVDMISIYGNLYQEYRQQVSMLIPVPK IKFIKHK
Specific function: Unknown
COG id: COG2020
COG function: function code O; Putative protein-S-isoprenylcysteine methyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI21358557, Length=231, Percent_Identity=26.8398268398268, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29007; Mature: 28876
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRTLVFIYGIVCYLISLMTFLYTIGFVGNLIVPKTLDLNLDGSLIKGLLIDILLIFLFG CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHH VQHSIMARQSFKKWWTKIIPEVIERSTYVLMASLVLLLLCWQWSSFGGIIWNIQNPIIFN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH VIYGIFAVGWLIVFLSTFMINHFDLFGLRQVYLYWRGQEYEDLEFRNPGFYKYIRHPIML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHH GFLIAFWATPLMTSSHLVFAIGITIYVLIGIKLEEVDMISIYGNLYQEYRQQVSMLIPVP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC KIKFIKHK CCHHCCCC >Mature Secondary Structure SRTLVFIYGIVCYLISLMTFLYTIGFVGNLIVPKTLDLNLDGSLIKGLLIDILLIFLFG CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHH VQHSIMARQSFKKWWTKIIPEVIERSTYVLMASLVLLLLCWQWSSFGGIIWNIQNPIIFN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH VIYGIFAVGWLIVFLSTFMINHFDLFGLRQVYLYWRGQEYEDLEFRNPGFYKYIRHPIML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHH GFLIAFWATPLMTSSHLVFAIGITIYVLIGIKLEEVDMISIYGNLYQEYRQQVSMLIPVP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC KIKFIKHK CCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA