| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478134
Identifier: 113478134
GI number: 113478134
Start: 7323658
End: 7325688
Strand: Reverse
Name: 113478134
Synonym: Tery_4768
Alternate gene names: NA
Gene position: 7325688-7323658 (Counterclockwise)
Preceding gene: 113478135
Following gene: 113478133
Centisome position: 94.52
GC content: 31.41
Gene sequence:
>2031_bases GTGAATCAGGAAACATCGGCTATCAATTTTAACCAAACAGCAGAGTTTTATTTATCCCAGGGAAAATTAGAAGCAGCTTA TGAAATTTGTCAAAACATCTTAGGGGATTTACCTAACTTTGCTCCCGCCTACAATACTCAAGGAAAAGTATTACAAGCAA TGGGAAAAATAGAATCAGCAATTATCAGTTATCGCCAAGCAATAAAATTAAATCCTCAACAAATTGAAACTTATAAAATA TTAGGAGATATCTTAGTAAAACAAGAACAATTATCTGAAGCGATCGCCTGTTATGAAACAGGTATTAAATATAACCCAAA AGCATCATTATTTTATCATAAATTAGGCTTAGTATTAATACAACTCAAAAGCTGGGATGAAGCAGTCAGCGCCTTCTGTC GTGCAATTCAATTTAATCCAAATTTTCCCTGGTCTTACTATAAATTAGGAGAAGCTTTAACTCAACAAAAAAAATGGCAT CAAGCGGTTATTGCTTATCAACGTTCTATTGAGATTAAACCAGATTTATGTTGGTCTTATCAACATCTAGGTAATGCTCT AATTAAACAGGGAAAAATAGATCAAGCGATCGCCTATTATCAAGAAATACTTCAACAGCAACCACACCTTGATAGAATTC ATAAATTATTAGCAGATGCTTTAGTCGAAAAAGGTGAAATTGATGGAGCAATTCCTAATTATCTCAAAGCTATTCAGTTA AATCCAGATTTTCCTTGGTCTCATGTATGTTTATGGGAAATATTTCTCAAAAAAGATCAATGGAATGAAGCAGTTATTAT TTATCGCCAAGCAATTAAACTTAACCCTAATGCTTTTTGGTTATGGACTTACTTAGGAAATGCTTTGGTTAAACAAGGAG ATTTAGAAACAGCAATTACTTGTTATCAAAAAGCTATTTCTATTCAACCCAATATTTCGAAAATTTATCAATTTTTAGGA GATGCTTTTGTTCAACAACAAAAGTGGGATGAAGCTGCTTTTGCTTATCTGCGTGCTATAGAAATTAACCCAGAATTATC CTGGTCAAATTATCATTTATGGAATACCTTAGACCGCTGCCATAAATTAGATGCAGTAGTCAATTTATATCGGCAGTTTA TTAAAAAAAATCCAGATTCATTTTTATCTTATTTACGCCTTGGAAAAATCCTAACAAAACAGAATCAAATAAATGAAGCA ATTATCTGTTATCAAACTGCTTGTTACCAACAAACTATAAAATCTTATCCCTATCTTTTCAAAAAAAAGTGGGATTTTAC TGAAGTTAAAAATCCTAATTTTCTGATTATTGGAGTAGGAAAAGGAGGAACTACATCTTTATTTAGTTATCTGATACAAC ATCCTCAAGTTTTGCCTCCTGTGGTGAAAGAAGTAGATTTTTGGTCAATTAATTTTAAGAACGGTATAAATTGGTATCTG TCTCATTTTCCTGCTCTTCCTAGCAATCAAAATTTCATCACTGGAGAAGGAAGTCCTAGTTATTTAGGAAATTTGGAAGC TCCAGGTAGAATATTTAGTTATTTCTCCAAAATCAAGTTAATTATTATTTTGAGAAATCCTGTAGATAGAGCTATTTCTC ACTACCATTATTGGTTGAGAATAAATAGAGAAAATCGTTTGTTAGAAACTGCATTAAATCAGGAATTAGAAAGTTGGAAA ATGATTTATAAAAATTCTCCTTTAGATAGCAGTTATTGGCATCATGGATTATATTATTTAGGCACTGGCATATATATAGA TTTTATCCACAATTGGATGAGCATATTTCCGAAAGAGCAATTTCTGATTTTATCCACAGAAGAATTTTATCGAAATCCAA AAACTATCATGAAAGAAGTCTTTGATTTTCTCGGTTTGCCAAACTATAATGTTCCCGAATACAATAAATTAAATTTAGGA TATTATCCCTCTACAAGTAAATCAATGCAACAAAAATTGAGCAATTTCTTTCGACCTCATAATCAAAAGTTGGAGGAGTA TTTAGGTATGAAATTTAACTGGGAAAGTTGA
Upstream 100 bases:
>100_bases TCTAATAGTAAATAATCTGAAAAATATTTATAGAATATTATATGATAAACTTTTTCCAATTTTAAAGAATACTGAAATCA TCTTTCTAGGAAAATTTACA
Downstream 100 bases:
>100_bases GGTAGATTACTAGGAATCATAACATTTATTGAAAACTTTTATACACTTTTTTACTATGGGAGTAGAGTGGTGGGGGAGTG AGGGGAATAGAAATTACTCC
Product: sulfotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 676; Mature: 676
Protein sequence:
>676_residues MNQETSAINFNQTAEFYLSQGKLEAAYEICQNILGDLPNFAPAYNTQGKVLQAMGKIESAIISYRQAIKLNPQQIETYKI LGDILVKQEQLSEAIACYETGIKYNPKASLFYHKLGLVLIQLKSWDEAVSAFCRAIQFNPNFPWSYYKLGEALTQQKKWH QAVIAYQRSIEIKPDLCWSYQHLGNALIKQGKIDQAIAYYQEILQQQPHLDRIHKLLADALVEKGEIDGAIPNYLKAIQL NPDFPWSHVCLWEIFLKKDQWNEAVIIYRQAIKLNPNAFWLWTYLGNALVKQGDLETAITCYQKAISIQPNISKIYQFLG DAFVQQQKWDEAAFAYLRAIEINPELSWSNYHLWNTLDRCHKLDAVVNLYRQFIKKNPDSFLSYLRLGKILTKQNQINEA IICYQTACYQQTIKSYPYLFKKKWDFTEVKNPNFLIIGVGKGGTTSLFSYLIQHPQVLPPVVKEVDFWSINFKNGINWYL SHFPALPSNQNFITGEGSPSYLGNLEAPGRIFSYFSKIKLIIILRNPVDRAISHYHYWLRINRENRLLETALNQELESWK MIYKNSPLDSSYWHHGLYYLGTGIYIDFIHNWMSIFPKEQFLILSTEEFYRNPKTIMKEVFDFLGLPNYNVPEYNKLNLG YYPSTSKSMQQKLSNFFRPHNQKLEEYLGMKFNWES
Sequences:
>Translated_676_residues MNQETSAINFNQTAEFYLSQGKLEAAYEICQNILGDLPNFAPAYNTQGKVLQAMGKIESAIISYRQAIKLNPQQIETYKI LGDILVKQEQLSEAIACYETGIKYNPKASLFYHKLGLVLIQLKSWDEAVSAFCRAIQFNPNFPWSYYKLGEALTQQKKWH QAVIAYQRSIEIKPDLCWSYQHLGNALIKQGKIDQAIAYYQEILQQQPHLDRIHKLLADALVEKGEIDGAIPNYLKAIQL NPDFPWSHVCLWEIFLKKDQWNEAVIIYRQAIKLNPNAFWLWTYLGNALVKQGDLETAITCYQKAISIQPNISKIYQFLG DAFVQQQKWDEAAFAYLRAIEINPELSWSNYHLWNTLDRCHKLDAVVNLYRQFIKKNPDSFLSYLRLGKILTKQNQINEA IICYQTACYQQTIKSYPYLFKKKWDFTEVKNPNFLIIGVGKGGTTSLFSYLIQHPQVLPPVVKEVDFWSINFKNGINWYL SHFPALPSNQNFITGEGSPSYLGNLEAPGRIFSYFSKIKLIIILRNPVDRAISHYHYWLRINRENRLLETALNQELESWK MIYKNSPLDSSYWHHGLYYLGTGIYIDFIHNWMSIFPKEQFLILSTEEFYRNPKTIMKEVFDFLGLPNYNVPEYNKLNLG YYPSTSKSMQQKLSNFFRPHNQKLEEYLGMKFNWES >Mature_676_residues MNQETSAINFNQTAEFYLSQGKLEAAYEICQNILGDLPNFAPAYNTQGKVLQAMGKIESAIISYRQAIKLNPQQIETYKI LGDILVKQEQLSEAIACYETGIKYNPKASLFYHKLGLVLIQLKSWDEAVSAFCRAIQFNPNFPWSYYKLGEALTQQKKWH QAVIAYQRSIEIKPDLCWSYQHLGNALIKQGKIDQAIAYYQEILQQQPHLDRIHKLLADALVEKGEIDGAIPNYLKAIQL NPDFPWSHVCLWEIFLKKDQWNEAVIIYRQAIKLNPNAFWLWTYLGNALVKQGDLETAITCYQKAISIQPNISKIYQFLG DAFVQQQKWDEAAFAYLRAIEINPELSWSNYHLWNTLDRCHKLDAVVNLYRQFIKKNPDSFLSYLRLGKILTKQNQINEA IICYQTACYQQTIKSYPYLFKKKWDFTEVKNPNFLIIGVGKGGTTSLFSYLIQHPQVLPPVVKEVDFWSINFKNGINWYL SHFPALPSNQNFITGEGSPSYLGNLEAPGRIFSYFSKIKLIIILRNPVDRAISHYHYWLRINRENRLLETALNQELESWK MIYKNSPLDSSYWHHGLYYLGTGIYIDFIHNWMSIFPKEQFLILSTEEFYRNPKTIMKEVFDFLGLPNYNVPEYNKLNLG YYPSTSKSMQQKLSNFFRPHNQKLEEYLGMKFNWES
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 9 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI32307148, Length=370, Percent_Identity=30.2702702702703, Blast_Score=174, Evalue=3e-43, Organism=Homo sapiens, GI32307150, Length=370, Percent_Identity=30.2702702702703, Blast_Score=173, Evalue=4e-43, Organism=Homo sapiens, GI104876423, Length=278, Percent_Identity=32.7338129496403, Blast_Score=117, Evalue=5e-26, Organism=Homo sapiens, GI116089312, Length=267, Percent_Identity=28.8389513108614, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI5174465, Length=272, Percent_Identity=29.7794117647059, Blast_Score=107, Evalue=3e-23, Organism=Homo sapiens, GI5174467, Length=268, Percent_Identity=29.8507462686567, Blast_Score=106, Evalue=6e-23, Organism=Homo sapiens, GI5174463, Length=270, Percent_Identity=30, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI4758766, Length=268, Percent_Identity=32.089552238806, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI301336134, Length=365, Percent_Identity=23.8356164383562, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI45267824, Length=269, Percent_Identity=30.8550185873606, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI83415184, Length=365, Percent_Identity=23.8356164383562, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI12007650, Length=266, Percent_Identity=30.0751879699248, Blast_Score=100, Evalue=9e-21, Organism=Homo sapiens, GI4826764, Length=267, Percent_Identity=27.7153558052434, Blast_Score=87, Evalue=5e-17, Organism=Homo sapiens, GI4505353, Length=268, Percent_Identity=28.7313432835821, Blast_Score=86, Evalue=2e-16, Organism=Homo sapiens, GI118766330, Length=272, Percent_Identity=25.3676470588235, Blast_Score=86, Evalue=2e-16, Organism=Homo sapiens, GI118766328, Length=272, Percent_Identity=25.3676470588235, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI45505173, Length=312, Percent_Identity=26.6025641025641, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI4505351, Length=203, Percent_Identity=29.064039408867, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI22749211, Length=339, Percent_Identity=23.8938053097345, Blast_Score=74, Evalue=6e-13, Organism=Homo sapiens, GI167466177, Length=177, Percent_Identity=25.9887005649718, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI167466175, Length=177, Percent_Identity=25.9887005649718, Blast_Score=67, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115532692, Length=363, Percent_Identity=28.3746556473829, Blast_Score=151, Evalue=9e-37, Organism=Caenorhabditis elegans, GI115532690, Length=363, Percent_Identity=28.3746556473829, Blast_Score=151, Evalue=1e-36, Organism=Caenorhabditis elegans, GI71991175, Length=268, Percent_Identity=27.2388059701493, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17533853, Length=222, Percent_Identity=31.5315315315315, Blast_Score=90, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71986098, Length=268, Percent_Identity=25.7462686567164, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI25147174, Length=259, Percent_Identity=22.7799227799228, Blast_Score=66, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6319589, Length=442, Percent_Identity=20.8144796380091, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6319387, Length=274, Percent_Identity=21.8978102189781, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI17647755, Length=370, Percent_Identity=30.2702702702703, Blast_Score=171, Evalue=2e-42, Organism=Drosophila melanogaster, GI24585827, Length=370, Percent_Identity=30.2702702702703, Blast_Score=171, Evalue=2e-42, Organism=Drosophila melanogaster, GI24585829, Length=370, Percent_Identity=30.2702702702703, Blast_Score=171, Evalue=2e-42, Organism=Drosophila melanogaster, GI24643211, Length=270, Percent_Identity=28.1481481481481, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI161076610, Length=333, Percent_Identity=27.3273273273273, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI19920486, Length=333, Percent_Identity=27.3273273273273, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI281364285, Length=311, Percent_Identity=25.7234726688103, Blast_Score=92, Evalue=9e-19, Organism=Drosophila melanogaster, GI24581187, Length=311, Percent_Identity=25.7234726688103, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI24647123, Length=269, Percent_Identity=23.4200743494424, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI281365711, Length=223, Percent_Identity=26.457399103139, Blast_Score=71, Evalue=3e-12, Organism=Drosophila melanogaster, GI17736971, Length=223, Percent_Identity=26.457399103139, Blast_Score=71, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573557, Length=126, Percent_Identity=38.0952380952381, Blast_Score=71, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008940 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00515 TPR_1 [H]
EC number: NA
Molecular weight: Translated: 78996; Mature: 78996
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQETSAINFNQTAEFYLSQGKLEAAYEICQNILGDLPNFAPAYNTQGKVLQAMGKIESA CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH IISYRQAIKLNPQQIETYKILGDILVKQEQLSEAIACYETGIKYNPKASLFYHKLGLVLI HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEE QLKSWDEAVSAFCRAIQFNPNFPWSYYKLGEALTQQKKWHQAVIAYQRSIEIKPDLCWSY EECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH QHLGNALIKQGKIDQAIAYYQEILQQQPHLDRIHKLLADALVEKGEIDGAIPNYLKAIQL HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHEEEEE NPDFPWSHVCLWEIFLKKDQWNEAVIIYRQAIKLNPNAFWLWTYLGNALVKQGDLETAIT CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHEEECCCEEEHHHHHHHHHHCCCCHHHHHH CYQKAISIQPNISKIYQFLGDAFVQQQKWDEAAFAYLRAIEINPELSWSNYHLWNTLDRC HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHH HKLDAVVNLYRQFIKKNPDSFLSYLRLGKILTKQNQINEAIICYQTACYQQTIKSYPYLF HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCHHH KKKWDFTEVKNPNFLIIGVGKGGTTSLFSYLIQHPQVLPPVVKEVDFWSINFKNGINWYL HCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCHHHHCCCEEEEECCCCCHHHH SHFPALPSNQNFITGEGSPSYLGNLEAPGRIFSYFSKIKLIIILRNPVDRAISHYHYWLR HHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHHHHEEEEEE INRENRLLETALNQELESWKMIYKNSPLDSSYWHHGLYYLGTGIYIDFIHNWMSIFPKEQ ECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCC FLILSTEEFYRNPKTIMKEVFDFLGLPNYNVPEYNKLNLGYYPSTSKSMQQKLSNFFRPH EEEEECHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCC NQKLEEYLGMKFNWES HHHHHHHCCCCCCCCC >Mature Secondary Structure MNQETSAINFNQTAEFYLSQGKLEAAYEICQNILGDLPNFAPAYNTQGKVLQAMGKIESA CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH IISYRQAIKLNPQQIETYKILGDILVKQEQLSEAIACYETGIKYNPKASLFYHKLGLVLI HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEE QLKSWDEAVSAFCRAIQFNPNFPWSYYKLGEALTQQKKWHQAVIAYQRSIEIKPDLCWSY EECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH QHLGNALIKQGKIDQAIAYYQEILQQQPHLDRIHKLLADALVEKGEIDGAIPNYLKAIQL HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHEEEEE NPDFPWSHVCLWEIFLKKDQWNEAVIIYRQAIKLNPNAFWLWTYLGNALVKQGDLETAIT CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHEEECCCEEEHHHHHHHHHHCCCCHHHHHH CYQKAISIQPNISKIYQFLGDAFVQQQKWDEAAFAYLRAIEINPELSWSNYHLWNTLDRC HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHH HKLDAVVNLYRQFIKKNPDSFLSYLRLGKILTKQNQINEAIICYQTACYQQTIKSYPYLF HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCHHH KKKWDFTEVKNPNFLIIGVGKGGTTSLFSYLIQHPQVLPPVVKEVDFWSINFKNGINWYL HCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCHHHHCCCEEEEECCCCCHHHH SHFPALPSNQNFITGEGSPSYLGNLEAPGRIFSYFSKIKLIIILRNPVDRAISHYHYWLR HHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHHHHEEEEEE INRENRLLETALNQELESWKMIYKNSPLDSSYWHHGLYYLGTGIYIDFIHNWMSIFPKEQ ECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCC FLILSTEEFYRNPKTIMKEVFDFLGLPNYNVPEYNKLNLGYYPSTSKSMQQKLSNFFRPH EEEEECHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCC NQKLEEYLGMKFNWES HHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087; 9697413 [H]