| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113478116
Identifier: 113478116
GI number: 113478116
Start: 7280859
End: 7282040
Strand: Reverse
Name: 113478116
Synonym: Tery_4748
Alternate gene names: NA
Gene position: 7282040-7280859 (Counterclockwise)
Preceding gene: 113478117
Following gene: 113478114
Centisome position: 93.96
GC content: 40.02
Gene sequence:
>1182_bases GTGCGTTTAGGCAAACAAATACAACAGCAAAATTCTAATTTTAGGGATTGGTCATGGCCACTATGGCCAATTTTACCCCT ATATCCCTATGGACAACGGCGGACATTAAGAAAAGAAATAGTTAAAGATACAATATGGACTTTTGACCAACTTCAGGGTA TCTTCTATGTTACTGTGCCAATTAGGATGACAGTGGTCAGAATGAACGGAGGCGGTTTATTTATCTATGCCCCAATAGCG CCAACGCGGGAATGTATGCGCTTTGTCAATGAATTAGTAGAAAAATATGGAGAAGTTCGCTACATTATTTTACCAACTAT TTCTGGCTTAGAACATAAGGTATATGTGGGGCCATTTGCCAGAAAATTTCCCACGGCGGAAGTTTTTGTCACGCCCAACC AATGGAGCTTTCCTTTAAATTTACCTCTAAGTTGGTTGGGTTTGCCAAGAAACCGTACATATCTGCTCCCTGTTAATAGT AAAGATACACCTTTTGCAGCAGAGTTTGAATATGCGACTCTCGGACCCCTTGATATTGGTATCAAACCTTTTGCAGAAGT AGTATTCTGCCATAGTCCATCCCAAACTTTACTGGCGGTTGACACCATTTTATCTGTACCGGCTGAACCGCCAGAAATTT TGAATTTAGACCCATATCCTTTATTGTTTCATGCTAAGGATGATGTATTTGATGTGGTAGAAGATACTCCCACAAATAGA TGTATAGGGTGGCAAAAAATATGTTTATTTGGATTATATTTTCAGGTGGATGCTTTAGATGTAGTTCCAGCTGAGGAAAT GTTAAAGAATGTTTGGAAAGCAAGCGATCGCTCGAAGCGTGCATATTTTGGTCTTTTACCGTGGCGCTGGAAGTCTGACT GGCAGAATTCTTTTACACAATTACGACAAGATGGGCGGTTGTTAGTAGCGCCTATATTACAAACTCTGATTTTAAATCGC GATCCACAGCAGGTGATGGAGTGGGTTGAAAAGGTGGCAACTTGGAATTTTCGGCAAGTTATTCCCTGTCACTTTGATGC ACCTATTCAGGCAAGTGGGTCTGAGTTTAGGCAAGGGTTTAGTTTTTTAGAAAAGGATAGTGGAGGGTATTTACCAGAGA CAGATTTAAAGTTTTTGAGAAATCTAGATGAAGGATTGAAGAAAAGAGGTATTTTACGTTAA
Upstream 100 bases:
>100_bases TGAAATATGGCTCGATAGGAATTCTCGTTCCTAACAGCCGGGGAGGATGAAAATTATCCCCATCCCAACAACTCTATTGT AGTAAATAGCTGCATTAAAG
Downstream 100 bases:
>100_bases CTGCCTTTTCTCTGTAGAATTCAAGGGTGGATATTTGTGTATCCCCTCAATAATTGGGGGTAGAGAATGATTCTGCGGGT GCGTGAGCAACTGAAGGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MRLGKQIQQQNSNFRDWSWPLWPILPLYPYGQRRTLRKEIVKDTIWTFDQLQGIFYVTVPIRMTVVRMNGGGLFIYAPIA PTRECMRFVNELVEKYGEVRYIILPTISGLEHKVYVGPFARKFPTAEVFVTPNQWSFPLNLPLSWLGLPRNRTYLLPVNS KDTPFAAEFEYATLGPLDIGIKPFAEVVFCHSPSQTLLAVDTILSVPAEPPEILNLDPYPLLFHAKDDVFDVVEDTPTNR CIGWQKICLFGLYFQVDALDVVPAEEMLKNVWKASDRSKRAYFGLLPWRWKSDWQNSFTQLRQDGRLLVAPILQTLILNR DPQQVMEWVEKVATWNFRQVIPCHFDAPIQASGSEFRQGFSFLEKDSGGYLPETDLKFLRNLDEGLKKRGILR
Sequences:
>Translated_393_residues MRLGKQIQQQNSNFRDWSWPLWPILPLYPYGQRRTLRKEIVKDTIWTFDQLQGIFYVTVPIRMTVVRMNGGGLFIYAPIA PTRECMRFVNELVEKYGEVRYIILPTISGLEHKVYVGPFARKFPTAEVFVTPNQWSFPLNLPLSWLGLPRNRTYLLPVNS KDTPFAAEFEYATLGPLDIGIKPFAEVVFCHSPSQTLLAVDTILSVPAEPPEILNLDPYPLLFHAKDDVFDVVEDTPTNR CIGWQKICLFGLYFQVDALDVVPAEEMLKNVWKASDRSKRAYFGLLPWRWKSDWQNSFTQLRQDGRLLVAPILQTLILNR DPQQVMEWVEKVATWNFRQVIPCHFDAPIQASGSEFRQGFSFLEKDSGGYLPETDLKFLRNLDEGLKKRGILR >Mature_393_residues MRLGKQIQQQNSNFRDWSWPLWPILPLYPYGQRRTLRKEIVKDTIWTFDQLQGIFYVTVPIRMTVVRMNGGGLFIYAPIA PTRECMRFVNELVEKYGEVRYIILPTISGLEHKVYVGPFARKFPTAEVFVTPNQWSFPLNLPLSWLGLPRNRTYLLPVNS KDTPFAAEFEYATLGPLDIGIKPFAEVVFCHSPSQTLLAVDTILSVPAEPPEILNLDPYPLLFHAKDDVFDVVEDTPTNR CIGWQKICLFGLYFQVDALDVVPAEEMLKNVWKASDRSKRAYFGLLPWRWKSDWQNSFTQLRQDGRLLVAPILQTLILNR DPQQVMEWVEKVATWNFRQVIPCHFDAPIQASGSEFRQGFSFLEKDSGGYLPETDLKFLRNLDEGLKKRGILR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45506; Mature: 45506
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLGKQIQQQNSNFRDWSWPLWPILPLYPYGQRRTLRKEIVKDTIWTFDQLQGIFYVTVP CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE IRMTVVRMNGGGLFIYAPIAPTRECMRFVNELVEKYGEVRYIILPTISGLEHKVYVGPFA EEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEECCHH RKFPTAEVFVTPNQWSFPLNLPLSWLGLPRNRTYLLPVNSKDTPFAAEFEYATLGPLDIG HHCCCEEEEECCCCCCCEECCCHHEEECCCCCEEEEEECCCCCCCEEEECCEECCCCCCC IKPFAEVVFCHSPSQTLLAVDTILSVPAEPPEILNLDPYPLLFHAKDDVFDVVEDTPTNR CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCC CIGWQKICLFGLYFQVDALDVVPAEEMLKNVWKASDRSKRAYFGLLPWRWKSDWQNSFTQ CCCHHHHHHHHHHEEECCEECCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHH LRQDGRLLVAPILQTLILNRDPQQVMEWVEKVATWNFRQVIPCHFDAPIQASGSEFRQGF HHHCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHH SFLEKDSGGYLPETDLKFLRNLDEGLKKRGILR HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MRLGKQIQQQNSNFRDWSWPLWPILPLYPYGQRRTLRKEIVKDTIWTFDQLQGIFYVTVP CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE IRMTVVRMNGGGLFIYAPIAPTRECMRFVNELVEKYGEVRYIILPTISGLEHKVYVGPFA EEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEECCHH RKFPTAEVFVTPNQWSFPLNLPLSWLGLPRNRTYLLPVNSKDTPFAAEFEYATLGPLDIG HHCCCEEEEECCCCCCCEECCCHHEEECCCCCEEEEEECCCCCCCEEEECCEECCCCCCC IKPFAEVVFCHSPSQTLLAVDTILSVPAEPPEILNLDPYPLLFHAKDDVFDVVEDTPTNR CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCC CIGWQKICLFGLYFQVDALDVVPAEEMLKNVWKASDRSKRAYFGLLPWRWKSDWQNSFTQ CCCHHHHHHHHHHEEECCEECCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHH LRQDGRLLVAPILQTLILNRDPQQVMEWVEKVATWNFRQVIPCHFDAPIQASGSEFRQGF HHHCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHH SFLEKDSGGYLPETDLKFLRNLDEGLKKRGILR HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA