Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113478116

Identifier: 113478116

GI number: 113478116

Start: 7280859

End: 7282040

Strand: Reverse

Name: 113478116

Synonym: Tery_4748

Alternate gene names: NA

Gene position: 7282040-7280859 (Counterclockwise)

Preceding gene: 113478117

Following gene: 113478114

Centisome position: 93.96

GC content: 40.02

Gene sequence:

>1182_bases
GTGCGTTTAGGCAAACAAATACAACAGCAAAATTCTAATTTTAGGGATTGGTCATGGCCACTATGGCCAATTTTACCCCT
ATATCCCTATGGACAACGGCGGACATTAAGAAAAGAAATAGTTAAAGATACAATATGGACTTTTGACCAACTTCAGGGTA
TCTTCTATGTTACTGTGCCAATTAGGATGACAGTGGTCAGAATGAACGGAGGCGGTTTATTTATCTATGCCCCAATAGCG
CCAACGCGGGAATGTATGCGCTTTGTCAATGAATTAGTAGAAAAATATGGAGAAGTTCGCTACATTATTTTACCAACTAT
TTCTGGCTTAGAACATAAGGTATATGTGGGGCCATTTGCCAGAAAATTTCCCACGGCGGAAGTTTTTGTCACGCCCAACC
AATGGAGCTTTCCTTTAAATTTACCTCTAAGTTGGTTGGGTTTGCCAAGAAACCGTACATATCTGCTCCCTGTTAATAGT
AAAGATACACCTTTTGCAGCAGAGTTTGAATATGCGACTCTCGGACCCCTTGATATTGGTATCAAACCTTTTGCAGAAGT
AGTATTCTGCCATAGTCCATCCCAAACTTTACTGGCGGTTGACACCATTTTATCTGTACCGGCTGAACCGCCAGAAATTT
TGAATTTAGACCCATATCCTTTATTGTTTCATGCTAAGGATGATGTATTTGATGTGGTAGAAGATACTCCCACAAATAGA
TGTATAGGGTGGCAAAAAATATGTTTATTTGGATTATATTTTCAGGTGGATGCTTTAGATGTAGTTCCAGCTGAGGAAAT
GTTAAAGAATGTTTGGAAAGCAAGCGATCGCTCGAAGCGTGCATATTTTGGTCTTTTACCGTGGCGCTGGAAGTCTGACT
GGCAGAATTCTTTTACACAATTACGACAAGATGGGCGGTTGTTAGTAGCGCCTATATTACAAACTCTGATTTTAAATCGC
GATCCACAGCAGGTGATGGAGTGGGTTGAAAAGGTGGCAACTTGGAATTTTCGGCAAGTTATTCCCTGTCACTTTGATGC
ACCTATTCAGGCAAGTGGGTCTGAGTTTAGGCAAGGGTTTAGTTTTTTAGAAAAGGATAGTGGAGGGTATTTACCAGAGA
CAGATTTAAAGTTTTTGAGAAATCTAGATGAAGGATTGAAGAAAAGAGGTATTTTACGTTAA

Upstream 100 bases:

>100_bases
TGAAATATGGCTCGATAGGAATTCTCGTTCCTAACAGCCGGGGAGGATGAAAATTATCCCCATCCCAACAACTCTATTGT
AGTAAATAGCTGCATTAAAG

Downstream 100 bases:

>100_bases
CTGCCTTTTCTCTGTAGAATTCAAGGGTGGATATTTGTGTATCCCCTCAATAATTGGGGGTAGAGAATGATTCTGCGGGT
GCGTGAGCAACTGAAGGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MRLGKQIQQQNSNFRDWSWPLWPILPLYPYGQRRTLRKEIVKDTIWTFDQLQGIFYVTVPIRMTVVRMNGGGLFIYAPIA
PTRECMRFVNELVEKYGEVRYIILPTISGLEHKVYVGPFARKFPTAEVFVTPNQWSFPLNLPLSWLGLPRNRTYLLPVNS
KDTPFAAEFEYATLGPLDIGIKPFAEVVFCHSPSQTLLAVDTILSVPAEPPEILNLDPYPLLFHAKDDVFDVVEDTPTNR
CIGWQKICLFGLYFQVDALDVVPAEEMLKNVWKASDRSKRAYFGLLPWRWKSDWQNSFTQLRQDGRLLVAPILQTLILNR
DPQQVMEWVEKVATWNFRQVIPCHFDAPIQASGSEFRQGFSFLEKDSGGYLPETDLKFLRNLDEGLKKRGILR

Sequences:

>Translated_393_residues
MRLGKQIQQQNSNFRDWSWPLWPILPLYPYGQRRTLRKEIVKDTIWTFDQLQGIFYVTVPIRMTVVRMNGGGLFIYAPIA
PTRECMRFVNELVEKYGEVRYIILPTISGLEHKVYVGPFARKFPTAEVFVTPNQWSFPLNLPLSWLGLPRNRTYLLPVNS
KDTPFAAEFEYATLGPLDIGIKPFAEVVFCHSPSQTLLAVDTILSVPAEPPEILNLDPYPLLFHAKDDVFDVVEDTPTNR
CIGWQKICLFGLYFQVDALDVVPAEEMLKNVWKASDRSKRAYFGLLPWRWKSDWQNSFTQLRQDGRLLVAPILQTLILNR
DPQQVMEWVEKVATWNFRQVIPCHFDAPIQASGSEFRQGFSFLEKDSGGYLPETDLKFLRNLDEGLKKRGILR
>Mature_393_residues
MRLGKQIQQQNSNFRDWSWPLWPILPLYPYGQRRTLRKEIVKDTIWTFDQLQGIFYVTVPIRMTVVRMNGGGLFIYAPIA
PTRECMRFVNELVEKYGEVRYIILPTISGLEHKVYVGPFARKFPTAEVFVTPNQWSFPLNLPLSWLGLPRNRTYLLPVNS
KDTPFAAEFEYATLGPLDIGIKPFAEVVFCHSPSQTLLAVDTILSVPAEPPEILNLDPYPLLFHAKDDVFDVVEDTPTNR
CIGWQKICLFGLYFQVDALDVVPAEEMLKNVWKASDRSKRAYFGLLPWRWKSDWQNSFTQLRQDGRLLVAPILQTLILNR
DPQQVMEWVEKVATWNFRQVIPCHFDAPIQASGSEFRQGFSFLEKDSGGYLPETDLKFLRNLDEGLKKRGILR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45506; Mature: 45506

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGKQIQQQNSNFRDWSWPLWPILPLYPYGQRRTLRKEIVKDTIWTFDQLQGIFYVTVP
CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
IRMTVVRMNGGGLFIYAPIAPTRECMRFVNELVEKYGEVRYIILPTISGLEHKVYVGPFA
EEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEECCHH
RKFPTAEVFVTPNQWSFPLNLPLSWLGLPRNRTYLLPVNSKDTPFAAEFEYATLGPLDIG
HHCCCEEEEECCCCCCCEECCCHHEEECCCCCEEEEEECCCCCCCEEEECCEECCCCCCC
IKPFAEVVFCHSPSQTLLAVDTILSVPAEPPEILNLDPYPLLFHAKDDVFDVVEDTPTNR
CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCC
CIGWQKICLFGLYFQVDALDVVPAEEMLKNVWKASDRSKRAYFGLLPWRWKSDWQNSFTQ
CCCHHHHHHHHHHEEECCEECCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHH
LRQDGRLLVAPILQTLILNRDPQQVMEWVEKVATWNFRQVIPCHFDAPIQASGSEFRQGF
HHHCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHH
SFLEKDSGGYLPETDLKFLRNLDEGLKKRGILR
HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRLGKQIQQQNSNFRDWSWPLWPILPLYPYGQRRTLRKEIVKDTIWTFDQLQGIFYVTVP
CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
IRMTVVRMNGGGLFIYAPIAPTRECMRFVNELVEKYGEVRYIILPTISGLEHKVYVGPFA
EEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEECCHH
RKFPTAEVFVTPNQWSFPLNLPLSWLGLPRNRTYLLPVNSKDTPFAAEFEYATLGPLDIG
HHCCCEEEEECCCCCCCEECCCHHEEECCCCCEEEEEECCCCCCCEEEECCEECCCCCCC
IKPFAEVVFCHSPSQTLLAVDTILSVPAEPPEILNLDPYPLLFHAKDDVFDVVEDTPTNR
CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCC
CIGWQKICLFGLYFQVDALDVVPAEEMLKNVWKASDRSKRAYFGLLPWRWKSDWQNSFTQ
CCCHHHHHHHHHHEEECCEECCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHH
LRQDGRLLVAPILQTLILNRDPQQVMEWVEKVATWNFRQVIPCHFDAPIQASGSEFRQGF
HHHCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHH
SFLEKDSGGYLPETDLKFLRNLDEGLKKRGILR
HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA