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The map label for this gene is cph2 [H]

Identifier: 113478117

GI number: 113478117

Start: 7284210

End: 7286588

Strand: Reverse

Name: cph2 [H]

Synonym: Tery_4749

Alternate gene names: 113478117

Gene position: 7286588-7284210 (Counterclockwise)

Preceding gene: 113478118

Following gene: 113478116

Centisome position: 94.02

GC content: 31.95

Gene sequence:

>2379_bases
ATGTTTGCTGAAGCTACTATCTATTCATCACCTCTACAAAAAGCAATTGACCGTCATCCATTAACTATGACTCCAGATAC
TCTTCTGTTTGATGTCTTACAAGTAATAAGTCAGTTACAGAATAGTTGTCTTTTGCCTAATTTGAGTATATCTAAAAATC
AAGTCTATCCATCAATATTATTAAACCCAATAAATACAAAATGTGTTTTAGTAGTTGAGAATAAACCTGTTCAAGAGACT
CCAAAGCAGAATATACAAGTATCTTTATTAGGAATATTGACTACTACTGATATTGTCAAATTAATTTCCGCTGGTAAAGT
TAATAACTTAGAAAGTTTATCAAAAAAAATATATCTTGGAGAGGTCATGAAATCCAATATTATTACTCTCAAAGAATCAG
AAGACCAAGATTTATTTACAGCCTTGTCTTTGTTCCGAAAATATAAAATTAGTCATATACCAGTACTAGATAGGAAAAAC
CAAATCGTTGGTGTTGTGACACCAGAAAAAATTCGTCAAGTGCTCCAACCTTCTAATATTCTTAGATTAAGACGGGTAAA
TGAAATCAAAAATGATTGTGTAACAGTTACAATTTCTGCAACAGAATCACTATTGCAAGTTAGTAAACTGATGTCAGAAT
ACAAAGTGAATAATGTGATTATTACACAGAAGAAAAAACTGAAAACACAAAATAAAAAAATTGAAGAACCTATTGGTATA
GTTACTCAAGATGACATTCTACAAGCTTATTTTCTGAATATGGATTTAGCAAAAATACCTGTCAAAACAATTATGGATAC
TGAACTGAATTTTGTGAAATCAACAAATTCTCTATGGGATGCTCAGAAAAAAATGTTGCAGGAACAAGTACAAGTATTGT
TAGTATGTAGTCAACAAGGAGAATTACTAGGAACAGTGAATCAGGCAAACTTACTACAAGTTGTAGACCCTACGGTAATG
TTTGGGTTGGTCAAAAAATTACGAGCTGATGTGAATCAACTACAAGCAGAAAAATTGGAGTTGTTACGCAGTCGGAATGC
AGAATTAGAAAAAGAAGTGCAGGCACGAACGGCAGAAATACAGGAGCAGTTAGAGCGTGATCGACTTCTGGCAAAAATTG
CTCTCAGGATTCATCAATCTCTTAATCTCAACGAAATAATAAATGCAGCAGTGTCAGAAGTGCAACAATTATTGACAGCC
GATCGAGTAGTTTTATTTCAAGTAAAATCTTCAAAAGTAACAAAGATAGTTGCTGAATCAGTAGTTCATAATTGCAGTTC
TTGGATGGATAATCAAGCTATAGATGATTACTTAATATCAAATTTAAAAGTAAAGAAAAATAAGACTTATGCAGTTGCTG
ATATCGATCAAACAGATTTACCTATAGAAGAAATTAGGAGTTTGAAGGAAAAACAGGTAAAAGCTTTCTTGATAGTACCC
ATTTGTCTAGATGGGCCACTATGGGGAATTATGTGTACCCAAGAATGCTCAGGCACGCGACAGTGGCAAGCATCTGAAAT
TGATCTATTAAAGCAATTAGGAACTCAGTTAGCGATCGCTATTCAACAAGCTCAACTTTATCAACAAGTACGAATTCTCA
ACACAGACCTAGAAAGACAAGTACAAGAGCGCACTATAGAATTGGAAGAAAAAGTCAAAGAATTAGAACAACTTAATATT
CTCAAAGATGATTTTTTAAGTACTGTTTCCCATGAATTAAGAACACCTCTATCAAATATGAAAATGGCTATTCATATGCT
GAAAGTATTTCCTATTTCAGAAAAGGGTCAAAAATATTTGAATATTTTAGATACAGAGTGCAAAAGAGAAATTGAATTAA
TTACTGATTTATTAGATTTACAACATTTAGAAGTGAGTAAAAAATCTATTGCTTTAGATATAATAGATTTAACAACTTGG
CTTCCTACTATTGTAGATCCTTTTAAATCCCGAGCAAAAGAACGGCAACAAATTATCAATAGTAAATATCCTCAACAATT
ACCTAATATCCGTTCTAATAATAATAGTTTAGGGAGGATTTTAGCAGAAATTCTAAATAATGCTTGTAAGTATACCCAAA
ATGGTGGTGTAATTAAATTTTCAATAGAAATCAACCAGCAAAAAAGTAGCAACAAGAGTCTCTCAGAAACACTTTATAGC
ATCAAATTTATAGTTAGTAATCCATCAGAAATTCCTGAATCAGAATTACCTAAAATATTCAATAAATTTTATCGAGTACC
TAATGCAGATCCTTGGAAACAAGGCGGAACAGGTTTAGGTTTAGCTCTAGTAAAAAAATTAGTAGAACAGTTAAATGGTA
ATATAATTGTTAAAAGTAGTAATGGTTGGACAACTTTTACAGTGGAATTACCGAGTTAG

Upstream 100 bases:

>100_bases
TTGGTAACTTTCTCAGGATCATCAGACTGCCATGTTTTTTACTCTTGTTTGATATGATATGTATAATTGTTCTTATTTTA
TAAAATCAGGAAATATAATT

Downstream 100 bases:

>100_bases
GAATTCATCAAATTATGATTTCTCATATTTACAGGATTTATACACCACAATAATAAACAGGCTTTTGATGATCTAATTAT
TGTCTTTTAAAATCATAAAA

Product: multi-sensor signal transduction histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 792; Mature: 792

Protein sequence:

>792_residues
MFAEATIYSSPLQKAIDRHPLTMTPDTLLFDVLQVISQLQNSCLLPNLSISKNQVYPSILLNPINTKCVLVVENKPVQET
PKQNIQVSLLGILTTTDIVKLISAGKVNNLESLSKKIYLGEVMKSNIITLKESEDQDLFTALSLFRKYKISHIPVLDRKN
QIVGVVTPEKIRQVLQPSNILRLRRVNEIKNDCVTVTISATESLLQVSKLMSEYKVNNVIITQKKKLKTQNKKIEEPIGI
VTQDDILQAYFLNMDLAKIPVKTIMDTELNFVKSTNSLWDAQKKMLQEQVQVLLVCSQQGELLGTVNQANLLQVVDPTVM
FGLVKKLRADVNQLQAEKLELLRSRNAELEKEVQARTAEIQEQLERDRLLAKIALRIHQSLNLNEIINAAVSEVQQLLTA
DRVVLFQVKSSKVTKIVAESVVHNCSSWMDNQAIDDYLISNLKVKKNKTYAVADIDQTDLPIEEIRSLKEKQVKAFLIVP
ICLDGPLWGIMCTQECSGTRQWQASEIDLLKQLGTQLAIAIQQAQLYQQVRILNTDLERQVQERTIELEEKVKELEQLNI
LKDDFLSTVSHELRTPLSNMKMAIHMLKVFPISEKGQKYLNILDTECKREIELITDLLDLQHLEVSKKSIALDIIDLTTW
LPTIVDPFKSRAKERQQIINSKYPQQLPNIRSNNNSLGRILAEILNNACKYTQNGGVIKFSIEINQQKSSNKSLSETLYS
IKFIVSNPSEIPESELPKIFNKFYRVPNADPWKQGGTGLGLALVKKLVEQLNGNIIVKSSNGWTTFTVELPS

Sequences:

>Translated_792_residues
MFAEATIYSSPLQKAIDRHPLTMTPDTLLFDVLQVISQLQNSCLLPNLSISKNQVYPSILLNPINTKCVLVVENKPVQET
PKQNIQVSLLGILTTTDIVKLISAGKVNNLESLSKKIYLGEVMKSNIITLKESEDQDLFTALSLFRKYKISHIPVLDRKN
QIVGVVTPEKIRQVLQPSNILRLRRVNEIKNDCVTVTISATESLLQVSKLMSEYKVNNVIITQKKKLKTQNKKIEEPIGI
VTQDDILQAYFLNMDLAKIPVKTIMDTELNFVKSTNSLWDAQKKMLQEQVQVLLVCSQQGELLGTVNQANLLQVVDPTVM
FGLVKKLRADVNQLQAEKLELLRSRNAELEKEVQARTAEIQEQLERDRLLAKIALRIHQSLNLNEIINAAVSEVQQLLTA
DRVVLFQVKSSKVTKIVAESVVHNCSSWMDNQAIDDYLISNLKVKKNKTYAVADIDQTDLPIEEIRSLKEKQVKAFLIVP
ICLDGPLWGIMCTQECSGTRQWQASEIDLLKQLGTQLAIAIQQAQLYQQVRILNTDLERQVQERTIELEEKVKELEQLNI
LKDDFLSTVSHELRTPLSNMKMAIHMLKVFPISEKGQKYLNILDTECKREIELITDLLDLQHLEVSKKSIALDIIDLTTW
LPTIVDPFKSRAKERQQIINSKYPQQLPNIRSNNNSLGRILAEILNNACKYTQNGGVIKFSIEINQQKSSNKSLSETLYS
IKFIVSNPSEIPESELPKIFNKFYRVPNADPWKQGGTGLGLALVKKLVEQLNGNIIVKSSNGWTTFTVELPS
>Mature_792_residues
MFAEATIYSSPLQKAIDRHPLTMTPDTLLFDVLQVISQLQNSCLLPNLSISKNQVYPSILLNPINTKCVLVVENKPVQET
PKQNIQVSLLGILTTTDIVKLISAGKVNNLESLSKKIYLGEVMKSNIITLKESEDQDLFTALSLFRKYKISHIPVLDRKN
QIVGVVTPEKIRQVLQPSNILRLRRVNEIKNDCVTVTISATESLLQVSKLMSEYKVNNVIITQKKKLKTQNKKIEEPIGI
VTQDDILQAYFLNMDLAKIPVKTIMDTELNFVKSTNSLWDAQKKMLQEQVQVLLVCSQQGELLGTVNQANLLQVVDPTVM
FGLVKKLRADVNQLQAEKLELLRSRNAELEKEVQARTAEIQEQLERDRLLAKIALRIHQSLNLNEIINAAVSEVQQLLTA
DRVVLFQVKSSKVTKIVAESVVHNCSSWMDNQAIDDYLISNLKVKKNKTYAVADIDQTDLPIEEIRSLKEKQVKAFLIVP
ICLDGPLWGIMCTQECSGTRQWQASEIDLLKQLGTQLAIAIQQAQLYQQVRILNTDLERQVQERTIELEEKVKELEQLNI
LKDDFLSTVSHELRTPLSNMKMAIHMLKVFPISEKGQKYLNILDTECKREIELITDLLDLQHLEVSKKSIALDIIDLTTW
LPTIVDPFKSRAKERQQIINSKYPQQLPNIRSNNNSLGRILAEILNNACKYTQNGGVIKFSIEINQQKSSNKSLSETLYS
IKFIVSNPSEIPESELPKIFNKFYRVPNADPWKQGGTGLGLALVKKLVEQLNGNIIVKSSNGWTTFTVELPS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=244, Percent_Identity=27.8688524590164, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1789149, Length=294, Percent_Identity=25.5102040816327, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1788393, Length=243, Percent_Identity=27.9835390946502, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786783, Length=275, Percent_Identity=24, Blast_Score=78, Evalue=3e-15,
Organism=Escherichia coli, GI1790436, Length=247, Percent_Identity=27.5303643724696, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI1790861, Length=232, Percent_Identity=24.5689655172414, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1790346, Length=230, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI145693157, Length=264, Percent_Identity=25.7575757575758, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082128, Length=263, Percent_Identity=24.7148288973384, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788713, Length=236, Percent_Identity=23.3050847457627, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786600, Length=251, Percent_Identity=25.8964143426295, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081816, Length=266, Percent_Identity=23.3082706766917, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: 2.7.3.- [C]

Molecular weight: Translated: 89697; Mature: 89697

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAEATIYSSPLQKAIDRHPLTMTPDTLLFDVLQVISQLQNSCLLPNLSISKNQVYPSIL
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHE
LNPINTKCVLVVENKPVQETPKQNIQVSLLGILTTTDIVKLISAGKVNNLESLSKKIYLG
ECCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
EVMKSNIITLKESEDQDLFTALSLFRKYKISHIPVLDRKNQIVGVVTPEKIRQVLQPSNI
HHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEECCCCCEEEEECHHHHHHHHCCCHH
LRLRRVNEIKNDCVTVTISATESLLQVSKLMSEYKVNNVIITQKKKLKTQNKKIEEPIGI
HHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCC
VTQDDILQAYFLNMDLAKIPVKTIMDTELNFVKSTNSLWDAQKKMLQEQVQVLLVCSQQG
CCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
ELLGTVNQANLLQVVDPTVMFGLVKKLRADVNQLQAEKLELLRSRNAELEKEVQARTAEI
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QEQLERDRLLAKIALRIHQSLNLNEIINAAVSEVQQLLTADRVVLFQVKSSKVTKIVAES
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHH
VVHNCSSWMDNQAIDDYLISNLKVKKNKTYAVADIDQTDLPIEEIRSLKEKQVKAFLIVP
HHHHHHHHHCCCHHHHHHHCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHCCEEEEEEE
ICLDGPLWGIMCTQECSGTRQWQASEIDLLKQLGTQLAIAIQQAQLYQQVRILNTDLERQ
EEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQERTIELEEKVKELEQLNILKDDFLSTVSHELRTPLSNMKMAIHMLKVFPISEKGQKYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHH
NILDTECKREIELITDLLDLQHLEVSKKSIALDIIDLTTWLPTIVDPFKSRAKERQQIIN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKYPQQLPNIRSNNNSLGRILAEILNNACKYTQNGGVIKFSIEINQQKSSNKSLSETLYS
CCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHH
IKFIVSNPSEIPESELPKIFNKFYRVPNADPWKQGGTGLGLALVKKLVEQLNGNIIVKSS
HEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
NGWTTFTVELPS
CCEEEEEEECCC
>Mature Secondary Structure
MFAEATIYSSPLQKAIDRHPLTMTPDTLLFDVLQVISQLQNSCLLPNLSISKNQVYPSIL
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHE
LNPINTKCVLVVENKPVQETPKQNIQVSLLGILTTTDIVKLISAGKVNNLESLSKKIYLG
ECCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
EVMKSNIITLKESEDQDLFTALSLFRKYKISHIPVLDRKNQIVGVVTPEKIRQVLQPSNI
HHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEECCCCCEEEEECHHHHHHHHCCCHH
LRLRRVNEIKNDCVTVTISATESLLQVSKLMSEYKVNNVIITQKKKLKTQNKKIEEPIGI
HHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCC
VTQDDILQAYFLNMDLAKIPVKTIMDTELNFVKSTNSLWDAQKKMLQEQVQVLLVCSQQG
CCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
ELLGTVNQANLLQVVDPTVMFGLVKKLRADVNQLQAEKLELLRSRNAELEKEVQARTAEI
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QEQLERDRLLAKIALRIHQSLNLNEIINAAVSEVQQLLTADRVVLFQVKSSKVTKIVAES
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHH
VVHNCSSWMDNQAIDDYLISNLKVKKNKTYAVADIDQTDLPIEEIRSLKEKQVKAFLIVP
HHHHHHHHHCCCHHHHHHHCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHCCEEEEEEE
ICLDGPLWGIMCTQECSGTRQWQASEIDLLKQLGTQLAIAIQQAQLYQQVRILNTDLERQ
EEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQERTIELEEKVKELEQLNILKDDFLSTVSHELRTPLSNMKMAIHMLKVFPISEKGQKYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHH
NILDTECKREIELITDLLDLQHLEVSKKSIALDIIDLTTWLPTIVDPFKSRAKERQQIIN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKYPQQLPNIRSNNNSLGRILAEILNNACKYTQNGGVIKFSIEINQQKSSNKSLSETLYS
CCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHH
IKFIVSNPSEIPESELPKIFNKFYRVPNADPWKQGGTGLGLALVKKLVEQLNGNIIVKSS
HEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
NGWTTFTVELPS
CCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferring phosphorus-containing groups [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]