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The map label for this gene is kaiB [H]

Identifier: 113478051

GI number: 113478051

Start: 7184679

End: 7185443

Strand: Reverse

Name: kaiB [H]

Synonym: Tery_4671

Alternate gene names: 113478051

Gene position: 7185443-7184679 (Counterclockwise)

Preceding gene: 113478052

Following gene: 113478049

Centisome position: 92.71

GC content: 35.82

Gene sequence:

>765_bases
TTGAAGCTGACTCCTTTAAAATTTCCCCAGTTATTCAAAGGTATTGCCTTGTTTACACCAGGGGGAGATCTAATTTATTG
TATAGACCCAAGCAAAAAAAAACGATGGCATCTACACCTATGTCTAGAGCTACAAGCAGTATTGGGACTAACTGAACCAC
CCCATTTCTTAATACCTGGATACACTGCAACTATTGATAAATGGCTAAACCCTCACACTCAAGAAGTCCAAGTTTTTGCC
GAAGCTTATATGCCAGTCTTAAGATATCAGGCATTACTTAATGCAATTTTTTATACTGGTGAGATGATTTGGCAATGTGC
TCCATGGTCAGAGGAATTTTGTAATCCAATAGTAGTTTCTTCTTATTATGACAAGTTTCCTCAACTCTGGGAAAATCATA
ACTTTGTTATATGTCTTGAACGACAAGATATTAATCTCAATTCTACTTCACAGGTAGTCTCAACGTCTACTATTGATTCA
CAATCAAAGTTTCAAGGTTATGTTCTCCACTTATTTGTATCTGGTAAAAGTTTTGCTACTGAACAGACTCTTCAAAGTCT
TCACCAAATATTAGAGGAATATCTTTCTCTTCCTTATACTTTAAAAGTAATAGATGTCCTTCAACATCCTGAACAAGCTG
AAGTAGAACTAATTACTGCAACTCCTACTTTGATAAGAGTTTGGCCTCTTCCCGTCCGTAGAATTGTTGGGGAATTTGAT
AATGTAGAAATAATTCTCAGGTTGTTTGAAAGTACTAATACCTGA

Upstream 100 bases:

>100_bases
CTTTGCTAAGATATAGCTAAGTTAACTAAAGCAGATGTCTTAACTCGGCTAGCTTAACCGAAATACCCCAAAGTTTGCAG
TTGATTTTACATTTATTTTC

Downstream 100 bases:

>100_bases
TTCTAGATTTTATATTTTTTGCCATCTTAAATATTAGGTTAGTTTTTTTAGTACTGTAACCATATATAAACATCCTCTAG
GTTTTAGCTATTCTCAAAAA

Product: KaiB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKLTPLKFPQLFKGIALFTPGGDLIYCIDPSKKKRWHLHLCLELQAVLGLTEPPHFLIPGYTATIDKWLNPHTQEVQVFA
EAYMPVLRYQALLNAIFYTGEMIWQCAPWSEEFCNPIVVSSYYDKFPQLWENHNFVICLERQDINLNSTSQVVSTSTIDS
QSKFQGYVLHLFVSGKSFATEQTLQSLHQILEEYLSLPYTLKVIDVLQHPEQAEVELITATPTLIRVWPLPVRRIVGEFD
NVEIILRLFESTNT

Sequences:

>Translated_254_residues
MKLTPLKFPQLFKGIALFTPGGDLIYCIDPSKKKRWHLHLCLELQAVLGLTEPPHFLIPGYTATIDKWLNPHTQEVQVFA
EAYMPVLRYQALLNAIFYTGEMIWQCAPWSEEFCNPIVVSSYYDKFPQLWENHNFVICLERQDINLNSTSQVVSTSTIDS
QSKFQGYVLHLFVSGKSFATEQTLQSLHQILEEYLSLPYTLKVIDVLQHPEQAEVELITATPTLIRVWPLPVRRIVGEFD
NVEIILRLFESTNT
>Mature_254_residues
MKLTPLKFPQLFKGIALFTPGGDLIYCIDPSKKKRWHLHLCLELQAVLGLTEPPHFLIPGYTATIDKWLNPHTQEVQVFA
EAYMPVLRYQALLNAIFYTGEMIWQCAPWSEEFCNPIVVSSYYDKFPQLWENHNFVICLERQDINLNSTSQVVSTSTIDS
QSKFQGYVLHLFVSGKSFATEQTLQSLHQILEEYLSLPYTLKVIDVLQHPEQAEVELITATPTLIRVWPLPVRRIVGEFD
NVEIILRLFESTNT

Specific function: Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-non-specific transcription regulator that represses transcription, possibly by acting on the state of

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kaiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013474
- InterPro:   IPR011649
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF07689 KaiB [H]

EC number: NA

Molecular weight: Translated: 29287; Mature: 29287

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTPLKFPQLFKGIALFTPGGDLIYCIDPSKKKRWHLHLCLELQAVLGLTEPPHFLIPG
CCCCCCCCHHHHCCEEEEECCCCEEEEECCCCCCEEEEEEHEEHHHHHCCCCCCCEEECC
YTATIDKWLNPHTQEVQVFAEAYMPVLRYQALLNAIFYTGEMIWQCAPWSEEFCNPIVVS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHCCCEEEH
SYYDKFPQLWENHNFVICLERQDINLNSTSQVVSTSTIDSQSKFQGYVLHLFVSGKSFAT
HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHEECCCCCCCHHCCEEEEEEEECCCCHHH
EQTLQSLHQILEEYLSLPYTLKVIDVLQHPEQAEVELITATPTLIRVWPLPVRRIVGEFD
HHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCEEEEEECCCEEEECCCHHHHHHCCCC
NVEIILRLFESTNT
CHHHHHHHHHCCCC
>Mature Secondary Structure
MKLTPLKFPQLFKGIALFTPGGDLIYCIDPSKKKRWHLHLCLELQAVLGLTEPPHFLIPG
CCCCCCCCHHHHCCEEEEECCCCEEEEECCCCCCEEEEEEHEEHHHHHCCCCCCCEEECC
YTATIDKWLNPHTQEVQVFAEAYMPVLRYQALLNAIFYTGEMIWQCAPWSEEFCNPIVVS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHCCCEEEH
SYYDKFPQLWENHNFVICLERQDINLNSTSQVVSTSTIDSQSKFQGYVLHLFVSGKSFAT
HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHEECCCCCCCHHCCEEEEEEEECCCCHHH
EQTLQSLHQILEEYLSLPYTLKVIDVLQHPEQAEVELITATPTLIRVWPLPVRRIVGEFD
HHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCEEEEEECCCEEEECCCHHHHHHCCCC
NVEIILRLFESTNT
CHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]