| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478004
Identifier: 113478004
GI number: 113478004
Start: 7098413
End: 7098913
Strand: Reverse
Name: 113478004
Synonym: Tery_4619
Alternate gene names: NA
Gene position: 7098913-7098413 (Counterclockwise)
Preceding gene: 113478005
Following gene: 113478003
Centisome position: 91.6
GC content: 30.54
Gene sequence:
>501_bases ATGAGAAAAATTACTTTAATTTTCACCCTAATATTATCCCTATATTTAATAATATTTAATCCTCAGAATGCCCTAGCTTC TATTCATAAATACCCTGAATCTTCTATACAAATAATGTATCGTTCTCAACAAAGTTTGCGAGATATTTCAGACCGGGCAT GGCAAGCAGTATTATACAAAAGAATCAAATCTGGTCAATTAAAAAATTTAAATTTACGACTAGTAGGTTTTCCTGGAATG ATAAAATTAGCTAATTCCCAAAAATTGCAAATTACGACTGGCACTGGTAAGGTATGGAAAGCAGATAATGTTTTGTTAGA CTCATCTTTTCCTCCTAATGTTGCAGAATATAATTTTCTTGAGGTCATGAAAAATTTAGATTATGATACTCCACTGCGAC TACATTTATCTTTACAAGATTCTAGTATAGCTGAAATAGTAGTACCTATATTTGCTGTGAAAGAATGGCGTCAATTATTT GAAAAAATTGATTTTTGGTGA
Upstream 100 bases:
>100_bases TTTAACCTTTGAATAGGTTAACTTTGAATTGTAATTTTTACTTAACCCCTTGGGCTAGTTAACTTGTAACCTTAATTATT ATCAAGTAATTAATCAAAAA
Downstream 100 bases:
>100_bases CCAAAATTTAGATTAACCTCGGTTATTAATAGTCATAAATTTAACAGTTTTTAGCTAATGTGAGTAGGAAGTAGAGAGTA AGGTTTGCTACCAAGATATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 166; Mature: 166
Protein sequence:
>166_residues MRKITLIFTLILSLYLIIFNPQNALASIHKYPESSIQIMYRSQQSLRDISDRAWQAVLYKRIKSGQLKNLNLRLVGFPGM IKLANSQKLQITTGTGKVWKADNVLLDSSFPPNVAEYNFLEVMKNLDYDTPLRLHLSLQDSSIAEIVVPIFAVKEWRQLF EKIDFW
Sequences:
>Translated_166_residues MRKITLIFTLILSLYLIIFNPQNALASIHKYPESSIQIMYRSQQSLRDISDRAWQAVLYKRIKSGQLKNLNLRLVGFPGM IKLANSQKLQITTGTGKVWKADNVLLDSSFPPNVAEYNFLEVMKNLDYDTPLRLHLSLQDSSIAEIVVPIFAVKEWRQLF EKIDFW >Mature_166_residues MRKITLIFTLILSLYLIIFNPQNALASIHKYPESSIQIMYRSQQSLRDISDRAWQAVLYKRIKSGQLKNLNLRLVGFPGM IKLANSQKLQITTGTGKVWKADNVLLDSSFPPNVAEYNFLEVMKNLDYDTPLRLHLSLQDSSIAEIVVPIFAVKEWRQLF EKIDFW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19246; Mature: 19246
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKITLIFTLILSLYLIIFNPQNALASIHKYPESSIQIMYRSQQSLRDISDRAWQAVLYK CCHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCHHHEEEEHHHHHHHHHHHHHHHHHHHH RIKSGQLKNLNLRLVGFPGMIKLANSQKLQITTGTGKVWKADNVLLDSSFPPNVAEYNFL HHCCCCCCCCEEEEEECCCEEEECCCCEEEEEECCCCEEECCCEEEECCCCCCCHHHHHH EVMKNLDYDTPLRLHLSLQDSSIAEIVVPIFAVKEWRQLFEKIDFW HHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRKITLIFTLILSLYLIIFNPQNALASIHKYPESSIQIMYRSQQSLRDISDRAWQAVLYK CCHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCHHHEEEEHHHHHHHHHHHHHHHHHHHH RIKSGQLKNLNLRLVGFPGMIKLANSQKLQITTGTGKVWKADNVLLDSSFPPNVAEYNFL HHCCCCCCCCEEEEEECCCEEEECCCCEEEEEECCCCEEECCCEEEECCCCCCCHHHHHH EVMKNLDYDTPLRLHLSLQDSSIAEIVVPIFAVKEWRQLFEKIDFW HHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA