Click here to switch to the map view.

The map label for this gene is 113478003

Identifier: 113478003

GI number: 113478003

Start: 7097893

End: 7098228

Strand: Reverse

Name: 113478003

Synonym: Tery_4618

Alternate gene names: NA

Gene position: 7098228-7097893 (Counterclockwise)

Preceding gene: 113478004

Following gene: 113478002

Centisome position: 91.59

GC content: 30.36

Gene sequence:

>336_bases
ATGAAAAAAATAATTACAGTTTGCTTGTTAATATTTATATTAATAAACATTATTAAAATACCCACTGTATTAGCAACAGA
AATAACACAAGGCGCAGAAGTTTTTCAGATTCATTGTGCAGGTTGTCATGCCAAAGGAGGCAATATTGTTAAATGGTGGA
AGAACTTAAAAATAAGAACTTTGAAAAGAAATAAATTAGATTCTGTTGAGGCGATAGCTTACTTAGTTAAGAATGGGAAA
AATAATATGTCAGCTTACAAAGACCGTTTAACAGAAATAGAGATACAAACAGTATCAGCCTATGTATTGAAACAGGCAGA
AAACCGTTGGAATTAA

Upstream 100 bases:

>100_bases
TTGCTACCAAGATATATAGTAATAATTCCTATGTTTGTATAAAATTCTTAAAACTATTTCTCTTACTTACTGAAATTAGT
CTAAATTTATTAAGGTAAAA

Downstream 100 bases:

>100_bases
TAGACTTATGTATGAAAAATGTAATATTTGAACATACCTAATATTTAAACATATAGTCTCTATAACTTAAATATATACTC
TAGTTTTACTAAATCTCGGA

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MKKIITVCLLIFILINIIKIPTVLATEITQGAEVFQIHCAGCHAKGGNIVKWWKNLKIRTLKRNKLDSVEAIAYLVKNGK
NNMSAYKDRLTEIEIQTVSAYVLKQAENRWN

Sequences:

>Translated_111_residues
MKKIITVCLLIFILINIIKIPTVLATEITQGAEVFQIHCAGCHAKGGNIVKWWKNLKIRTLKRNKLDSVEAIAYLVKNGK
NNMSAYKDRLTEIEIQTVSAYVLKQAENRWN
>Mature_111_residues
MKKIITVCLLIFILINIIKIPTVLATEITQGAEVFQIHCAGCHAKGGNIVKWWKNLKIRTLKRNKLDSVEAIAYLVKNGK
NNMSAYKDRLTEIEIQTVSAYVLKQAENRWN

Specific function: Unknown

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cellular thylakoid lumen (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PetJ subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 12655; Mature: 12655

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIITVCLLIFILINIIKIPTVLATEITQGAEVFQIHCAGCHAKGGNIVKWWKNLKIRT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCEEEE
LKRNKLDSVEAIAYLVKNGKNNMSAYKDRLTEIEIQTVSAYVLKQAENRWN
ECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKIITVCLLIFILINIIKIPTVLATEITQGAEVFQIHCAGCHAKGGNIVKWWKNLKIRT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCEEEE
LKRNKLDSVEAIAYLVKNGKNNMSAYKDRLTEIEIQTVSAYVLKQAENRWN
ECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]