| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477981
Identifier: 113477981
GI number: 113477981
Start: 7064571
End: 7065665
Strand: Reverse
Name: 113477981
Synonym: Tery_4593
Alternate gene names: NA
Gene position: 7065665-7064571 (Counterclockwise)
Preceding gene: 113477983
Following gene: 113477980
Centisome position: 91.17
GC content: 39.18
Gene sequence:
>1095_bases ATGGTAATTAAACAGCCAGCAGCAGCAGCAATGCTGACCCAAAAACCATCTAATATTAATAAAAAAGCTATTCTTAGTGC AGACCTAGGACGAACAGCTACCAAAGCTTGTGTCAGTCGAACCCAAAATGGCGTAGTTTTTATTCCGTCCAATGTCAAAC AATTGAGTGTAGATCAGGTCAGAGCAGGCAATTTTGAGTCTAAACCTACAGATCCATTATTAGATATGTGGTTGGAATAT CAAGGTTATGGATATGCTGTAGGTCAACTAGCTGCTGACTTTGGAGCTAATCTATTTGGTGATGAACGATCTTTTGCCAA GTCTAAAATTGAAGATGCTTTAGTTAAAGTTTTGGCCTGTGCTGGCTATTTTCAGCTCAAAGGAGAATTTTCGGTTGTTA TAGGTTTACCATTCTATAACCAAGAACAATTTGAAAAGGAAAAAGCACAAATTATTAGCCAATTAGAATCTCCTCATCAA ATGTTTTATCGAGGTGGTGAAGAAGTAGAAATTAGAATTAACAAGGTTTGGGTCATGCCAGAAGGATATGGTAGTTTACT ATGGACTGAGGCTAATCATGGCAAAGAATTTCAACCACAATTACCTAAACTATCTCTTGCTATTGTTGATATTGGCCATC AAACCACTGATTTCTTGATGGTAGATCGATTCCGGTTTGCCAGAGCAGCCTCTAAGAGTGAACCTTTTGCTATGAGCCAA TTTTATGAAGATGTAGCTAGTAAGATTGAAGGGGCAGACTCTCAATCTTTGTATTTATTAGAAGCAGTCCACAAACCTGA AGGTCAGCGTTCCTATCGTCCCAAAGGAGCTACAAAACCTATTAATCTTGATGGTATTATACCTGAGCTGCGTAAAGTTT TTGCTGCTAAACTTTGTGACCGTTTAATTAAGTGGATACCAGAAAGGGTAAGCGATGTTATTCTCACTGGTGGTGGGGCA GATTTTTTCCGGGAAGATTTGGAAAAGCTACTTCAAGAAGCAGGTCTCAAGTCTCACCTGGCTCAACCACCAAGAGAAGC CAATGCTCTGGGGCAATATATTTATGGAGAAGCTCAACTAGCTATATCTAAGTAA
Upstream 100 bases:
>100_bases TATTGGATTTTCAAAATACTATATATGGAAATCAGCAAATAGAACTCTTAATAACGGTAATATTTTTATTTAAGAACTTT AATGAGGTAATACTACCATT
Downstream 100 bases:
>100_bases GTTGTTACTAAAAAATTGGGTTTAAAGTTTCCCCTTTTTAGGGAACTTTTTACCTATAATTAGATAAATCTAAAAGGTAA TCAACCCTTATAAAAATCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MVIKQPAAAAMLTQKPSNINKKAILSADLGRTATKACVSRTQNGVVFIPSNVKQLSVDQVRAGNFESKPTDPLLDMWLEY QGYGYAVGQLAADFGANLFGDERSFAKSKIEDALVKVLACAGYFQLKGEFSVVIGLPFYNQEQFEKEKAQIISQLESPHQ MFYRGGEEVEIRINKVWVMPEGYGSLLWTEANHGKEFQPQLPKLSLAIVDIGHQTTDFLMVDRFRFARAASKSEPFAMSQ FYEDVASKIEGADSQSLYLLEAVHKPEGQRSYRPKGATKPINLDGIIPELRKVFAAKLCDRLIKWIPERVSDVILTGGGA DFFREDLEKLLQEAGLKSHLAQPPREANALGQYIYGEAQLAISK
Sequences:
>Translated_364_residues MVIKQPAAAAMLTQKPSNINKKAILSADLGRTATKACVSRTQNGVVFIPSNVKQLSVDQVRAGNFESKPTDPLLDMWLEY QGYGYAVGQLAADFGANLFGDERSFAKSKIEDALVKVLACAGYFQLKGEFSVVIGLPFYNQEQFEKEKAQIISQLESPHQ MFYRGGEEVEIRINKVWVMPEGYGSLLWTEANHGKEFQPQLPKLSLAIVDIGHQTTDFLMVDRFRFARAASKSEPFAMSQ FYEDVASKIEGADSQSLYLLEAVHKPEGQRSYRPKGATKPINLDGIIPELRKVFAAKLCDRLIKWIPERVSDVILTGGGA DFFREDLEKLLQEAGLKSHLAQPPREANALGQYIYGEAQLAISK >Mature_364_residues MVIKQPAAAAMLTQKPSNINKKAILSADLGRTATKACVSRTQNGVVFIPSNVKQLSVDQVRAGNFESKPTDPLLDMWLEY QGYGYAVGQLAADFGANLFGDERSFAKSKIEDALVKVLACAGYFQLKGEFSVVIGLPFYNQEQFEKEKAQIISQLESPHQ MFYRGGEEVEIRINKVWVMPEGYGSLLWTEANHGKEFQPQLPKLSLAIVDIGHQTTDFLMVDRFRFARAASKSEPFAMSQ FYEDVASKIEGADSQSLYLLEAVHKPEGQRSYRPKGATKPINLDGIIPELRKVFAAKLCDRLIKWIPERVSDVILTGGGA DFFREDLEKLLQEAGLKSHLAQPPREANALGQYIYGEAQLAISK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40486; Mature: 40486
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVIKQPAAAAMLTQKPSNINKKAILSADLGRTATKACVSRTQNGVVFIPSNVKQLSVDQV CCCCCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCHHCHHHH RAGNFESKPTDPLLDMWLEYQGYGYAVGQLAADFGANLFGDERSFAKSKIEDALVKVLAC HCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AGYFQLKGEFSVVIGLPFYNQEQFEKEKAQIISQLESPHQMFYRGGEEVEIRINKVWVMP CCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEEEEEE EGYGSLLWTEANHGKEFQPQLPKLSLAIVDIGHQTTDFLMVDRFRFARAASKSEPFAMSQ CCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHH FYEDVASKIEGADSQSLYLLEAVHKPEGQRSYRPKGATKPINLDGIIPELRKVFAAKLCD HHHHHHHHHCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH RLIKWIPERVSDVILTGGGADFFREDLEKLLQEAGLKSHLAQPPREANALGQYIYGEAQL HHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCEEE AISK EECC >Mature Secondary Structure MVIKQPAAAAMLTQKPSNINKKAILSADLGRTATKACVSRTQNGVVFIPSNVKQLSVDQV CCCCCCHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCHHCHHHH RAGNFESKPTDPLLDMWLEYQGYGYAVGQLAADFGANLFGDERSFAKSKIEDALVKVLAC HCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH AGYFQLKGEFSVVIGLPFYNQEQFEKEKAQIISQLESPHQMFYRGGEEVEIRINKVWVMP CCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEEEEEE EGYGSLLWTEANHGKEFQPQLPKLSLAIVDIGHQTTDFLMVDRFRFARAASKSEPFAMSQ CCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHH FYEDVASKIEGADSQSLYLLEAVHKPEGQRSYRPKGATKPINLDGIIPELRKVFAAKLCD HHHHHHHHHCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH RLIKWIPERVSDVILTGGGADFFREDLEKLLQEAGLKSHLAQPPREANALGQYIYGEAQL HHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCEEE AISK EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA