Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113477940

Identifier: 113477940

GI number: 113477940

Start: 7011666

End: 7011896

Strand: Reverse

Name: 113477940

Synonym: Tery_4549

Alternate gene names: NA

Gene position: 7011896-7011666 (Counterclockwise)

Preceding gene: 113477941

Following gene: 113477938

Centisome position: 90.47

GC content: 30.3

Gene sequence:

>231_bases
GTGAATATATTAGGCTTTTATCAAGACCATATTAAGCAAAAGTTGAGTCCATCTCAAGTAGTAACATTACAAATATTATT
ATACTTAATTTCAGTACATAAAACTGTACAAATATCAAAGCTAACCAATTATTTTCAGCTACCAATTAAATCAGAAAGTA
AGCGAAAACTTATCGGGACTTTAGCAAATTTCAAGCCCAAACAAACCCTAAACTCTCTTTATGAGCGGTAA

Upstream 100 bases:

>100_bases
CCCTACCCATGGTTGATTATTTATTCATTAAAACATTAAAAAAAACTGTTAAAAATATGATAAAAAAGGGTTAATAATTA
CAAAAAAAAAAGAAGAAAAA

Downstream 100 bases:

>100_bases
ATACGTCGATGTTTTCATCTAACCACTCAACAAAACGATAAGATATTGCGGTACGAAATGCTTCTAAAGTATCAGTAAAC
GTATTTAATGGTTTGTTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MNILGFYQDHIKQKLSPSQVVTLQILLYLISVHKTVQISKLTNYFQLPIKSESKRKLIGTLANFKPKQTLNSLYER

Sequences:

>Translated_76_residues
MNILGFYQDHIKQKLSPSQVVTLQILLYLISVHKTVQISKLTNYFQLPIKSESKRKLIGTLANFKPKQTLNSLYER
>Mature_76_residues
MNILGFYQDHIKQKLSPSQVVTLQILLYLISVHKTVQISKLTNYFQLPIKSESKRKLIGTLANFKPKQTLNSLYER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8849; Mature: 8849

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILGFYQDHIKQKLSPSQVVTLQILLYLISVHKTVQISKLTNYFQLPIKSESKRKLIGT
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LANFKPKQTLNSLYER
HHCCCHHHHHHHHHCC
>Mature Secondary Structure
MNILGFYQDHIKQKLSPSQVVTLQILLYLISVHKTVQISKLTNYFQLPIKSESKRKLIGT
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LANFKPKQTLNSLYER
HHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA