Click here to switch to the map view.

The map label for this gene is rbcL

Identifier: 113477810

GI number: 113477810

Start: 6791736

End: 6793166

Strand: Reverse

Name: rbcL

Synonym: Tery_4410

Alternate gene names: 113477810

Gene position: 6793166-6791736 (Counterclockwise)

Preceding gene: 113477812

Following gene: 113477809

Centisome position: 87.65

GC content: 44.03

Gene sequence:

>1431_bases
ATGAGTTACGCTAAAACACAAACTCAGTCTAAATCTGGGTATCAGGCTGGAGTAAAAGACTATAAACTGACTTACTATAC
CCCTGATTACATACCAAAAGATACAGACCTTTTAGCAGCTTTCCGTATGAGTCCTCAACCTGGAGTTCCTCCAGAAGAAG
CTGGTGCTGCAGTGGCTGCTGAATCTTCTACTGGTACTTGGACAACAGTATGGACTGACTTATTGACTGACCTTGATCGC
TACAAAGGTCGTTGTTATGATATTGAATCTGTTCCTGGTGAAGATAATCAATATATTTGCTATGTAGCTTATCCTCTAGA
TTTATTTGAGGAAGGCTCTGTAACTAATATGTTAACCTCTATTGTCGGTAACGTATTTGGTTTCAAAGCACTACGGTCAC
TACGTCTGGAAGACTTAAGGATTCCAGTTGCTTACCTGAAGACTTTCCAAGGCCCTCCTCACGGTATTACTGTTGAGCGT
GATAAATTAAATAAATATGGTCGTCCTTTATTAGGTTGTACTATTAAGCCTAAGTTAGGTTTATCCGCTAAGAACTACGG
TAGAGCAGTTTATGAGTGCTTACGTGGAGGCTTAGACTTCACCAAGGATGACGAAAATATTAACTCTCAACCTTTCATGC
GCTGGCGCGATCGCTTCCTATTCGCTCAAGAAGCTATTGAAAAGGCCCAAGCCGAAACAGGTGAAATTAAAGGTCACTAC
CTCAACGTAACTGCCCCTACCTGTGAAGAAATGTTAGAGCGTGCAGATTTTGCTAAGGAGATTGGTACTCCAATCATTAT
GCACGACTATCTAACAGGTGGTTTTACAGCTAATACAACTCTAGCGAAATGGTGCCGTCGTAATGGTGTATTATTACACA
TTCACCGGGCAATGCACGCTGTTATTGACCGTCAGAAAGCCCACGGTATTCACTTCCGGGTTTTAGCTAAGTGCTTGAGA
ATGTCTGGTGGTGACCACCTCCACTCAGGTACTGTGGTTGGAAAGCTCGAAGGTGAAAAAGGCATTACAATGGGCTTTGT
AGACTTAATGCGGGAAGACCACGTTGAGCAAGACCGGGAACGTGGTATTTACTTTACTCAAGATTGGGCTTCTATGCCTG
GTGTAATGCCAGTAGCTTCTGGTGGTATTCACGTTTGGCATATGCCAGCTCTAGTAGAAATCTTCGGTGATGATTCCTGC
TTACAATTCGGTGGTGGTACTTTAGGCCACCCTTGGGGTAATGCTCCTGGTGCAACAGCTAACCGTGTAGCTCTGGAAGC
TTGTATCCAAGCTCGTAACGAAGGTCGCAACTTGTTCCGTGAAGGTGGCGATGTAATTCGTGAAGCTGCTAAGTGGTCTC
CTGATTTGGCCGTTGCTTGTGAACTCTGGAAAGAAATTAAGTTCGAGTTCGAGGCTATGGACACCCTCTAA

Upstream 100 bases:

>100_bases
AGAAACAGGAATTAAACATCAATTTGTCACTTTTTGTGACTTTTTGTATGAGCTTTATGAGTTTATGAAGCAGTAAAGAA
ATTCTTAGGAAAATTAAGAT

Downstream 100 bases:

>100_bases
GTCTATGGAAAATGGAAGACTTTAGATTGAATAGGTCAACAGATAGATAATTGCGTCAAACTTAAGTACGAAGAAATTAA
TCAATCCTTAATCTAAAATC

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MSYAKTQTQSKSGYQAGVKDYKLTYYTPDYIPKDTDLLAAFRMSPQPGVPPEEAGAAVAAESSTGTWTTVWTDLLTDLDR
YKGRCYDIESVPGEDNQYICYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRSLRLEDLRIPVAYLKTFQGPPHGITVER
DKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFAQEAIEKAQAETGEIKGHY
LNVTAPTCEEMLERADFAKEIGTPIIMHDYLTGGFTANTTLAKWCRRNGVLLHIHRAMHAVIDRQKAHGIHFRVLAKCLR
MSGGDHLHSGTVVGKLEGEKGITMGFVDLMREDHVEQDRERGIYFTQDWASMPGVMPVASGGIHVWHMPALVEIFGDDSC
LQFGGGTLGHPWGNAPGATANRVALEACIQARNEGRNLFREGGDVIREAAKWSPDLAVACELWKEIKFEFEAMDTL

Sequences:

>Translated_476_residues
MSYAKTQTQSKSGYQAGVKDYKLTYYTPDYIPKDTDLLAAFRMSPQPGVPPEEAGAAVAAESSTGTWTTVWTDLLTDLDR
YKGRCYDIESVPGEDNQYICYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRSLRLEDLRIPVAYLKTFQGPPHGITVER
DKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFAQEAIEKAQAETGEIKGHY
LNVTAPTCEEMLERADFAKEIGTPIIMHDYLTGGFTANTTLAKWCRRNGVLLHIHRAMHAVIDRQKAHGIHFRVLAKCLR
MSGGDHLHSGTVVGKLEGEKGITMGFVDLMREDHVEQDRERGIYFTQDWASMPGVMPVASGGIHVWHMPALVEIFGDDSC
LQFGGGTLGHPWGNAPGATANRVALEACIQARNEGRNLFREGGDVIREAAKWSPDLAVACELWKEIKFEFEAMDTL
>Mature_475_residues
SYAKTQTQSKSGYQAGVKDYKLTYYTPDYIPKDTDLLAAFRMSPQPGVPPEEAGAAVAAESSTGTWTTVWTDLLTDLDRY
KGRCYDIESVPGEDNQYICYVAYPLDLFEEGSVTNMLTSIVGNVFGFKALRSLRLEDLRIPVAYLKTFQGPPHGITVERD
KLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFAQEAIEKAQAETGEIKGHYL
NVTAPTCEEMLERADFAKEIGTPIIMHDYLTGGFTANTTLAKWCRRNGVLLHIHRAMHAVIDRQKAHGIHFRVLAKCLRM
SGGDHLHSGTVVGKLEGEKGITMGFVDLMREDHVEQDRERGIYFTQDWASMPGVMPVASGGIHVWHMPALVEIFGDDSCL
QFGGGTLGHPWGNAPGATANRVALEACIQARNEGRNLFREGGDVIREAAKWSPDLAVACELWKEIKFEFEAMDTL

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultan

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBL_TRIEI (Q10WH6)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_723871.1
- ProteinModelPortal:   Q10WH6
- SMR:   Q10WH6
- STRING:   Q10WH6
- GeneID:   4246063
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_4410
- NMPDR:   fig|203124.1.peg.3006
- eggNOG:   COG1850
- HOGENOM:   HBG405441
- OMA:   YTPDYTP
- ProtClustDB:   PRK04208
- BioCyc:   TERY203124:TERY_4410-MONOMER
- GO:   GO:0009536
- GO:   GO:0009853
- HAMAP:   MF_01338
- InterPro:   IPR020878
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444
- Gene3D:   G3DSA:3.20.20.110
- Gene3D:   G3DSA:3.30.70.150

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N; SSF51649 RuBisCO_large; SSF54966 RuBisCO_large

EC number: =4.1.1.39

Molecular weight: Translated: 53079; Mature: 52948

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: ACT_SITE 176-176 ACT_SITE 295-295 BINDING 124-124 BINDING 174-174 BINDING 178-178 BINDING 296-296 BINDING 328-328 BINDING 380-380

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYAKTQTQSKSGYQAGVKDYKLTYYTPDYIPKDTDLLAAFRMSPQPGVPPEEAGAAVAA
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHEECCCCCCCCHHHCCCEEEE
ESSTGTWTTVWTDLLTDLDRYKGRCYDIESVPGEDNQYICYVAYPLDLFEEGSVTNMLTS
CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCHHCCCCHHHHHHH
IVGNVFGFKALRSLRLEDLRIPVAYLKTFQGPPHGITVERDKLNKYGRPLLGCTIKPKLG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCC
LSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFAQEAIEKAQAETGEIKGHY
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LNVTAPTCEEMLERADFAKEIGTPIIMHDYLTGGFTANTTLAKWCRRNGVLLHIHRAMHA
EEECCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCEEEEHHHHHHH
VIDRQKAHGIHFRVLAKCLRMSGGDHLHSGTVVGKLEGEKGITMGFVDLMREDHVEQDRE
HHHHHHHCCHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
RGIYFTQDWASMPGVMPVASGGIHVWHMPALVEIFGDDSCLQFGGGTLGHPWGNAPGATA
CCCEEEEHHHHCCCCCEECCCCEEEEEHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCH
NRVALEACIQARNEGRNLFREGGDVIREAAKWSPDLAVACELWKEIKFEFEAMDTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SYAKTQTQSKSGYQAGVKDYKLTYYTPDYIPKDTDLLAAFRMSPQPGVPPEEAGAAVAA
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHEECCCCCCCCHHHCCCEEEE
ESSTGTWTTVWTDLLTDLDRYKGRCYDIESVPGEDNQYICYVAYPLDLFEEGSVTNMLTS
CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEECCCHHCCCCHHHHHHH
IVGNVFGFKALRSLRLEDLRIPVAYLKTFQGPPHGITVERDKLNKYGRPLLGCTIKPKLG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCC
LSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFAQEAIEKAQAETGEIKGHY
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LNVTAPTCEEMLERADFAKEIGTPIIMHDYLTGGFTANTTLAKWCRRNGVLLHIHRAMHA
EEECCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCEEEEHHHHHHH
VIDRQKAHGIHFRVLAKCLRMSGGDHLHSGTVVGKLEGEKGITMGFVDLMREDHVEQDRE
HHHHHHHCCHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
RGIYFTQDWASMPGVMPVASGGIHVWHMPALVEIFGDDSCLQFGGGTLGHPWGNAPGATA
CCCEEEEHHHHCCCCCEECCCCEEEEEHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCH
NRVALEACIQARNEGRNLFREGGDVIREAAKWSPDLAVACELWKEIKFEFEAMDTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA