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The map label for this gene is yqgF [C]

Identifier: 113477781

GI number: 113477781

Start: 6746543

End: 6746992

Strand: Reverse

Name: yqgF [C]

Synonym: Tery_4379

Alternate gene names: 113477781

Gene position: 6746992-6746543 (Counterclockwise)

Preceding gene: 113477782

Following gene: 113477780

Centisome position: 87.06

GC content: 38.44

Gene sequence:

>450_bases
ATGTCTCAAAAGCGTATTTCAGCCCTAGGTTTGGATGTAGGTATAAAACGTATGGGGGTTGCCGGATGTGATGGTACTGG
TTTAATTGCTACTGGTATTATGACTATCAAGCGGGCTTCATTTGAGAAAGATGTATTTCAATTGCAAAAGATTGTCCAGG
AACGTCAGGTACAAGTTCTTATAGTTGGTTTACCCTATTCTATGAATGGTTCTATAGGTTTCCAAGCTAAAAAAGTACAA
AGATATGCTCAAAGGTTGTCACAAACTCTCGGATTACCTCTAGAATACGTTGATGAACGTTTAACTTCGGTCCAAGCTGA
GGAAATGCTCAAGGCTGCTAATATTTCTCCTTCTCAAAATAAGGCCTTAATTGATAGAAAGGCAGCAGCATTGATTTTAC
AACAATGGCTTGATGAACGCAGAGAAAAAAATACTCAGTTGACAAGCTAA

Upstream 100 bases:

>100_bases
AGGTACTTACGCACTTATACTGGGGATAAGACTTTTATATAATCAATGTAAATAACACTATAAATTCAATTATTAATATA
AAAAGGAGTACAATTACCAA

Downstream 100 bases:

>100_bases
TCATTGCAATATTTCATTGACATATTGAGTAAAGGCTAATTTTGATAGATAAGTAGCAATAAAAATATAATTGGTTAGGG
TTAGGGTAGCTGTTTAATTG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSQKRISALGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLIVGLPYSMNGSIGFQAKKVQ
RYAQRLSQTLGLPLEYVDERLTSVQAEEMLKAANISPSQNKALIDRKAAALILQQWLDERREKNTQLTS

Sequences:

>Translated_149_residues
MSQKRISALGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLIVGLPYSMNGSIGFQAKKVQ
RYAQRLSQTLGLPLEYVDERLTSVQAEEMLKAANISPSQNKALIDRKAAALILQQWLDERREKNTQLTS
>Mature_148_residues
SQKRISALGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLIVGLPYSMNGSIGFQAKKVQR
YAQRLSQTLGLPLEYVDERLTSVQAEEMLKAANISPSQNKALIDRKAAALILQQWLDERREKNTQLTS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 16550; Mature: 16418

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQKRISALGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVL
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
IVGLPYSMNGSIGFQAKKVQRYAQRLSQTLGLPLEYVDERLTSVQAEEMLKAANISPSQN
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
KALIDRKAAALILQQWLDERREKNTQLTS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SQKRISALGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVL
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
IVGLPYSMNGSIGFQAKKVQRYAQRLSQTLGLPLEYVDERLTSVQAEEMLKAANISPSQN
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
KALIDRKAAALILQQWLDERREKNTQLTS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA