| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477780
Identifier: 113477780
GI number: 113477780
Start: 6745056
End: 6745637
Strand: Reverse
Name: 113477780
Synonym: Tery_4377
Alternate gene names: NA
Gene position: 6745637-6745056 (Counterclockwise)
Preceding gene: 113477781
Following gene: 113477779
Centisome position: 87.04
GC content: 34.02
Gene sequence:
>582_bases ATGCCTAAAATGTTTTCATCCCCAGAATCACAAGAAAATGGACAATCTCAAGAAACCTATATCACTTTAACTGATGAGGC AGAACGAATACTATGTTGTACTATAGAGTATTCTCTAGAGTCAGATGATGAAGAGTATGTAATGTTACTACCATTAGACT TACCTGTTGAAATATTTACTTGGGGGCCAGAAGATGTAGAACAAGCAAGTATTCCTGTAGATAATGAATTAGAAATTGAT AAAATTTTTGATACTGCTAAAGTTGTCCTTGAAGAACAAAACCTAGTCTTGCAAAGAACAGCAATAACGTTAACTGTTAC TGGGGAGTTACCAGAATGGGGTGAAGATGAACTAGATGAAGTAGATGAAAATGATGAGGCCAGTGAATATTATGAAGAAT TGGCAACTTTTTTGTATGAAGATCGGAAATACGCTATATACACACCATTAGATCCATTTTTGATTCCAGCTCGTAAAAGT GATAATGGAAAACTGGAATTACTTTCAGAAGAAGAGTTTAAGCAAATTCAGCCAATGGTTCAAACAATGCTAGAAAATCA ATTGTTTAATGATATGGAGTAA
Upstream 100 bases:
>100_bases ATACACGCTTGTCTGATGCAACAGCGGAACTGGGAAGCGAGAGACCCAAACTATACCGCAAGGTTAGTATGGGGTTATAT CACATTAACAAATAATTAAA
Downstream 100 bases:
>100_bases AGCATTTGTAGGTTTTAGTAAATTCAGTCCTTTGGTCAAAGATTTAGCACTTAGTAATACTCTAGAATAGTCGAATCATA ATTTTTACGACAAACTTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MPKMFSSPESQENGQSQETYITLTDEAERILCCTIEYSLESDDEEYVMLLPLDLPVEIFTWGPEDVEQASIPVDNELEID KIFDTAKVVLEEQNLVLQRTAITLTVTGELPEWGEDELDEVDENDEASEYYEELATFLYEDRKYAIYTPLDPFLIPARKS DNGKLELLSEEEFKQIQPMVQTMLENQLFNDME
Sequences:
>Translated_193_residues MPKMFSSPESQENGQSQETYITLTDEAERILCCTIEYSLESDDEEYVMLLPLDLPVEIFTWGPEDVEQASIPVDNELEID KIFDTAKVVLEEQNLVLQRTAITLTVTGELPEWGEDELDEVDENDEASEYYEELATFLYEDRKYAIYTPLDPFLIPARKS DNGKLELLSEEEFKQIQPMVQTMLENQLFNDME >Mature_192_residues PKMFSSPESQENGQSQETYITLTDEAERILCCTIEYSLESDDEEYVMLLPLDLPVEIFTWGPEDVEQASIPVDNELEIDK IFDTAKVVLEEQNLVLQRTAITLTVTGELPEWGEDELDEVDENDEASEYYEELATFLYEDRKYAIYTPLDPFLIPARKSD NGKLELLSEEEFKQIQPMVQTMLENQLFNDME
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22370; Mature: 22239
Theoretical pI: Translated: 3.52; Mature: 3.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKMFSSPESQENGQSQETYITLTDEAERILCCTIEYSLESDDEEYVMLLPLDLPVEIFT CCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEECCCCEEEEE WGPEDVEQASIPVDNELEIDKIFDTAKVVLEEQNLVLQRTAITLTVTGELPEWGEDELDE CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCHHHH VDENDEASEYYEELATFLYEDRKYAIYTPLDPFLIPARKSDNGKLELLSEEEFKQIQPMV CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCEEEECHHHHHHHHHHH QTMLENQLFNDME HHHHHHHHHCCCC >Mature Secondary Structure PKMFSSPESQENGQSQETYITLTDEAERILCCTIEYSLESDDEEYVMLLPLDLPVEIFT CCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEECCCCEEEEE WGPEDVEQASIPVDNELEIDKIFDTAKVVLEEQNLVLQRTAITLTVTGELPEWGEDELDE CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCHHHH VDENDEASEYYEELATFLYEDRKYAIYTPLDPFLIPARKSDNGKLELLSEEEFKQIQPMV CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCCCEEEECHHHHHHHHHHH QTMLENQLFNDME HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA