| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477742
Identifier: 113477742
GI number: 113477742
Start: 6688073
End: 6690226
Strand: Reverse
Name: 113477742
Synonym: Tery_4338
Alternate gene names: NA
Gene position: 6690226-6688073 (Counterclockwise)
Preceding gene: 113477745
Following gene: 113477740
Centisome position: 86.32
GC content: 37.42
Gene sequence:
>2154_bases ATGAACAAACCTTTAATATGTCACTTCCTCATCGGTCCCCCAGGATCAGGGAAATCAACCTTTGCCACCAAACTGTCAAC ATTAGGAGATTATACCATCATTTCTACAGACACAATACGCTCCAAACTCTATGGCAACGAAACCATCCAAGGAGAATGGA GGGAAATAGAAGCCACCTTACTCAAGCAAATTACCCAAAGCATCAAAGCAGGTATCCCCATCATTTACGATGCCACCAAT GCCATACGCCCCTATCGCATAGCCTTACTAAAGAAACTACCCCAAAAAAACTGTGCATGGATAGCATGGCATCTAAAAAC CTCTCTCCCTACCTGCCTAAAATGGAATAAACAACGGACTCGTAAAGTACCAGAAACTACTGTCAAAAAAATGTTTCTAT CCCTGAAAAACTTTCAGCCCATAATAGCAGAAGGCTTTGCAGCAGTACATACTCTTCAAAAACCTAACTTTAACCCCAAA ACAATACAGGAAAAAATTGACTCCCTAACCCGCAGCAGCGTTAACCGCCAAAACCGTCTCTCGTGCCTAGAATTTCATTC CTATTCCCGACTCCTAGACTTCGAGCGCCTCATGCATTTAATTGCCCTATTCATTAAATATCCAGGCCTTGGCAATTTAG AACAAACAGAACCCGATATACTAATTGCTATATTTAAAGAAGTACCAGAATTTCCAGATGCTTTAGCAGAAATAGTAGCA GTTATAGCCTTATTAAAAGGAGAAGTTTATGCAGACAGAGAAGCGATCGCTACTGACTTAGCTTGGTTAGAAAAAAACGG CATCGTAGCAGAAGGACAAACTGTTACTCCGGCAATATTACGTCAGGAAATATCCCCCCAACCCCTGACAAAAAGGGGGA AAAAGAAAAATGGAACATCTGATCTTCCCCTTAAAAGAAAAAAAGGGAAGGAGATAAAAGCGAGAAGTGAAAACAATTCA GAGCAAGACATCATTCCCCATCCTTATTCAGATATTGCTCCGTTTAAAAGGTTAATAACCGCCATTCGTTTGATCTTAAA CCGACCATTTCTCAGAAACGACGATCAAAAAAGTTTAGACATTTTTGCAGAAGAATTATCCAAACAACCAGGAATAGGAG GCAACTGTCGAGACAAATTTCGCAAGGATGTGGAATATATTCTCAAACCCTTTCATATATTGCCAGAATTTCCCATGCGA CGTGGTTATTTTGCCGGGACAGGAATTTTGTCCCAGGAGCAATTAAAACGTTTGCAGGATATATTACAAGGGCAAGTTAA AAGTATAGAAGATCCGATGGCTTTATCTACTTATGACCAGTTTTGTCAACGGATGATTTCTTCTAAAATTAACATTGAAA AACCTTATCCAATTAGAGCGATCGCTCATAAATCAATGATCGACTTAGAGTTCGTTGATGAGAATGTATTATCTCGGAAA CTTGATCAAATTGAAGAATTTATTATTCATGGAAAATTAGTCGAGTTAGAGCGGTTAAAAGGCAAAGGAAAATTTAGTGG AGGTGAAGAAGGAAAGTTTTCTGTTCGGTTATTACAGATAGTATTTTTTAATAATGCTTGGTATTTAGGTTTTGAATATG AGGGGGGTACTTTCAATGGCTTATTCAGGTTTGAACGTTTAGATCGCTTACGTATTAGTCAAGATTTAGGAAAGTCTTGC CCAGAAAAACAGCGCTCAAAATTAGAACGGTTACAAAAACTTTTAGATGCCAGCTTTGGGATATTTTTAGGTTATAAAGC TGAGGATCAAAGTAAATTTTTAAGTAAAGACAAGAAGAAAAAAAAGGAGGTAATAGTAACAGTTGAGTTGTGGTTTAATC AGGAGAAATTTGAGTTTGTATGTGAAAAAACTAAACTGTTTCCATCAGGAACATTGAAAATGTCACCTCCTCCTCAAGGT AGTAGTTTTATCCAGAAGAAGGAATATGAAAAAATTTTTGATTTGGAAGGTACAAAAAATAAACATTTTCCTTATCGGTT TCGAGTAGAGTTACCTTGTTGGTGTATAGAAGATGTGAGTTTTTTAAGTTGGGTTATTGGGTTTGGCGGTCATGTAAAAG TAAAAAAACCAGATGAATTAATCGATAGTGTTTATGAAATTGGGTTAGGTATTGTTGAAGTTTATGATCAGTGA
Upstream 100 bases:
>100_bases CCCTCAAGGGAAAAAATTAGGGGTGAGTCTATGTCTTCAGACTCTTTCAAACAAAAGTTTAATAGTGTAAAACTTGATAT TTTTAACACCGCTACCACAA
Downstream 100 bases:
>100_bases TCAAAAAACTTTATCCTTTTTTCCCTTTGGTTATATCATGTCCGGATAATTACTCATCAAAAAAAAATTCTGGTGGCAAG CGCCAATTCTATCCTCCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 717; Mature: 717
Protein sequence:
>717_residues MNKPLICHFLIGPPGSGKSTFATKLSTLGDYTIISTDTIRSKLYGNETIQGEWREIEATLLKQITQSIKAGIPIIYDATN AIRPYRIALLKKLPQKNCAWIAWHLKTSLPTCLKWNKQRTRKVPETTVKKMFLSLKNFQPIIAEGFAAVHTLQKPNFNPK TIQEKIDSLTRSSVNRQNRLSCLEFHSYSRLLDFERLMHLIALFIKYPGLGNLEQTEPDILIAIFKEVPEFPDALAEIVA VIALLKGEVYADREAIATDLAWLEKNGIVAEGQTVTPAILRQEISPQPLTKRGKKKNGTSDLPLKRKKGKEIKARSENNS EQDIIPHPYSDIAPFKRLITAIRLILNRPFLRNDDQKSLDIFAEELSKQPGIGGNCRDKFRKDVEYILKPFHILPEFPMR RGYFAGTGILSQEQLKRLQDILQGQVKSIEDPMALSTYDQFCQRMISSKINIEKPYPIRAIAHKSMIDLEFVDENVLSRK LDQIEEFIIHGKLVELERLKGKGKFSGGEEGKFSVRLLQIVFFNNAWYLGFEYEGGTFNGLFRFERLDRLRISQDLGKSC PEKQRSKLERLQKLLDASFGIFLGYKAEDQSKFLSKDKKKKKEVIVTVELWFNQEKFEFVCEKTKLFPSGTLKMSPPPQG SSFIQKKEYEKIFDLEGTKNKHFPYRFRVELPCWCIEDVSFLSWVIGFGGHVKVKKPDELIDSVYEIGLGIVEVYDQ
Sequences:
>Translated_717_residues MNKPLICHFLIGPPGSGKSTFATKLSTLGDYTIISTDTIRSKLYGNETIQGEWREIEATLLKQITQSIKAGIPIIYDATN AIRPYRIALLKKLPQKNCAWIAWHLKTSLPTCLKWNKQRTRKVPETTVKKMFLSLKNFQPIIAEGFAAVHTLQKPNFNPK TIQEKIDSLTRSSVNRQNRLSCLEFHSYSRLLDFERLMHLIALFIKYPGLGNLEQTEPDILIAIFKEVPEFPDALAEIVA VIALLKGEVYADREAIATDLAWLEKNGIVAEGQTVTPAILRQEISPQPLTKRGKKKNGTSDLPLKRKKGKEIKARSENNS EQDIIPHPYSDIAPFKRLITAIRLILNRPFLRNDDQKSLDIFAEELSKQPGIGGNCRDKFRKDVEYILKPFHILPEFPMR RGYFAGTGILSQEQLKRLQDILQGQVKSIEDPMALSTYDQFCQRMISSKINIEKPYPIRAIAHKSMIDLEFVDENVLSRK LDQIEEFIIHGKLVELERLKGKGKFSGGEEGKFSVRLLQIVFFNNAWYLGFEYEGGTFNGLFRFERLDRLRISQDLGKSC PEKQRSKLERLQKLLDASFGIFLGYKAEDQSKFLSKDKKKKKEVIVTVELWFNQEKFEFVCEKTKLFPSGTLKMSPPPQG SSFIQKKEYEKIFDLEGTKNKHFPYRFRVELPCWCIEDVSFLSWVIGFGGHVKVKKPDELIDSVYEIGLGIVEVYDQ >Mature_717_residues MNKPLICHFLIGPPGSGKSTFATKLSTLGDYTIISTDTIRSKLYGNETIQGEWREIEATLLKQITQSIKAGIPIIYDATN AIRPYRIALLKKLPQKNCAWIAWHLKTSLPTCLKWNKQRTRKVPETTVKKMFLSLKNFQPIIAEGFAAVHTLQKPNFNPK TIQEKIDSLTRSSVNRQNRLSCLEFHSYSRLLDFERLMHLIALFIKYPGLGNLEQTEPDILIAIFKEVPEFPDALAEIVA VIALLKGEVYADREAIATDLAWLEKNGIVAEGQTVTPAILRQEISPQPLTKRGKKKNGTSDLPLKRKKGKEIKARSENNS EQDIIPHPYSDIAPFKRLITAIRLILNRPFLRNDDQKSLDIFAEELSKQPGIGGNCRDKFRKDVEYILKPFHILPEFPMR RGYFAGTGILSQEQLKRLQDILQGQVKSIEDPMALSTYDQFCQRMISSKINIEKPYPIRAIAHKSMIDLEFVDENVLSRK LDQIEEFIIHGKLVELERLKGKGKFSGGEEGKFSVRLLQIVFFNNAWYLGFEYEGGTFNGLFRFERLDRLRISQDLGKSC PEKQRSKLERLQKLLDASFGIFLGYKAEDQSKFLSKDKKKKKEVIVTVELWFNQEKFEFVCEKTKLFPSGTLKMSPPPQG SSFIQKKEYEKIFDLEGTKNKHFPYRFRVELPCWCIEDVSFLSWVIGFGGHVKVKKPDELIDSVYEIGLGIVEVYDQ
Specific function: Unknown
COG id: COG4639
COG function: function code R; Predicted kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82282; Mature: 82282
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKPLICHFLIGPPGSGKSTFATKLSTLGDYTIISTDTIRSKLYGNETIQGEWREIEATL CCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCCCHHHHHHHHH LKQITQSIKAGIPIIYDATNAIRPYRIALLKKLPQKNCAWIAWHLKTSLPTCLKWNKQRT HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEHHCCCHHHHCCHHHH RKVPETTVKKMFLSLKNFQPIIAEGFAAVHTLQKPNFNPKTIQEKIDSLTRSSVNRQNRL CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHH SCLEFHSYSRLLDFERLMHLIALFIKYPGLGNLEQTEPDILIAIFKEVPEFPDALAEIVA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH VIALLKGEVYADREAIATDLAWLEKNGIVAEGQTVTPAILRQEISPQPLTKRGKKKNGTS HHHHHHCCHHCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCCCHHHCCCCCCCCC DLPLKRKKGKEIKARSENNSEQDIIPHPYSDIAPFKRLITAIRLILNRPFLRNDDQKSLD CCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH IFAEELSKQPGIGGNCRDKFRKDVEYILKPFHILPEFPMRRGYFAGTGILSQEQLKRLQD HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH ILQGQVKSIEDPMALSTYDQFCQRMISSKINIEKPYPIRAIAHKSMIDLEFVDENVLSRK HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCHHEEHHHHHHHHHHHH LDQIEEFIIHGKLVELERLKGKGKFSGGEEGKFSVRLLQIVFFNNAWYLGFEYEGGTFNG HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEECCEEEEEEEECCCCCHH LFRFERLDRLRISQDLGKSCPEKQRSKLERLQKLLDASFGIFLGYKAEDQSKFLSKDKKK HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHC KKEVIVTVELWFNQEKFEFVCEKTKLFPSGTLKMSPPPQGSSFIQKKEYEKIFDLEGTKN CCEEEEEEEEEECCHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCC KHFPYRFRVELPCWCIEDVSFLSWVIGFGGHVKVKKPDELIDSVYEIGLGIVEVYDQ CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCEEECCC >Mature Secondary Structure MNKPLICHFLIGPPGSGKSTFATKLSTLGDYTIISTDTIRSKLYGNETIQGEWREIEATL CCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCCCHHHHHHHHH LKQITQSIKAGIPIIYDATNAIRPYRIALLKKLPQKNCAWIAWHLKTSLPTCLKWNKQRT HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEHHCCCHHHHCCHHHH RKVPETTVKKMFLSLKNFQPIIAEGFAAVHTLQKPNFNPKTIQEKIDSLTRSSVNRQNRL CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHH SCLEFHSYSRLLDFERLMHLIALFIKYPGLGNLEQTEPDILIAIFKEVPEFPDALAEIVA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH VIALLKGEVYADREAIATDLAWLEKNGIVAEGQTVTPAILRQEISPQPLTKRGKKKNGTS HHHHHHCCHHCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCCCHHHCCCCCCCCC DLPLKRKKGKEIKARSENNSEQDIIPHPYSDIAPFKRLITAIRLILNRPFLRNDDQKSLD CCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH IFAEELSKQPGIGGNCRDKFRKDVEYILKPFHILPEFPMRRGYFAGTGILSQEQLKRLQD HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH ILQGQVKSIEDPMALSTYDQFCQRMISSKINIEKPYPIRAIAHKSMIDLEFVDENVLSRK HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCHHEEHHHHHHHHHHHH LDQIEEFIIHGKLVELERLKGKGKFSGGEEGKFSVRLLQIVFFNNAWYLGFEYEGGTFNG HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCHHHEEEEEEEECCEEEEEEEECCCCCHH LFRFERLDRLRISQDLGKSCPEKQRSKLERLQKLLDASFGIFLGYKAEDQSKFLSKDKKK HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHC KKEVIVTVELWFNQEKFEFVCEKTKLFPSGTLKMSPPPQGSSFIQKKEYEKIFDLEGTKN CCEEEEEEEEEECCHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCC KHFPYRFRVELPCWCIEDVSFLSWVIGFGGHVKVKKPDELIDSVYEIGLGIVEVYDQ CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA