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The map label for this gene is yjcF [C]

Identifier: 113477740

GI number: 113477740

Start: 6683811

End: 6684374

Strand: Reverse

Name: yjcF [C]

Synonym: Tery_4336

Alternate gene names: 113477740

Gene position: 6684374-6683811 (Counterclockwise)

Preceding gene: 113477742

Following gene: 113477739

Centisome position: 86.25

GC content: 31.03

Gene sequence:

>564_bases
ATGATTATCAACCGAATCGAGATTAGCTCTAAAAATATTAAGATAGAGAATATGAATGCAGAGGAATTACTATGGAGATA
TGCAGAGGGTCAAAGAGAATTTTCTGGTATTGATTTAAGTAATATAGAGTTATTTGAAGCTAATTTAGAAGGAATTAATT
TAGAAGGTTGTAATTTAACAAGAGCTTATCTTCCTTATGCAAATTTGAATCAAGCTAACCTCCAAGGATGTAATTTACTA
GAAGTAAAAATGGGAGATATTCAACTTTATAAAGCCAACTTATCAAATACTAATATTCAACAGGGACATCTATCAAGAGC
TAATTTGCGTCATGCTAATCTTCAAGGTGCAAATTTGAGGGGAATTAATTTACAAGGTGCAAACTTATACCATGCAAACT
TAAGAGATACAGATTTAAGGTATGGAGATTTGAGAGGAACTAACCTAGAAAAAGCTAAGTTAGATAATGCTAAATTGGGA
TGGTGTAATTTATTTAGAGCAAGAATTGTTGATTTATCAATGGCAGAATACGATCATACTACTATCAATCCTAATGGATA
TTGA

Upstream 100 bases:

>100_bases
TAAAAAAGGATTAGGATAGTAGTAATTTTTGCCCAACAATATTAGTATAACTTATTATAAAAATACAATACATAAATAAT
CATCATTTATTCAATAAATT

Downstream 100 bases:

>100_bases
TGGTTGAAAAAGGTATTAGCTATAAGGTTAATTTTGGCTAAAAATAAAATATTTATTTTTCATAGAGTGAGGATATTTTA
GAGACTGTTGAACAACAAAA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MIINRIEISSKNIKIENMNAEELLWRYAEGQREFSGIDLSNIELFEANLEGINLEGCNLTRAYLPYANLNQANLQGCNLL
EVKMGDIQLYKANLSNTNIQQGHLSRANLRHANLQGANLRGINLQGANLYHANLRDTDLRYGDLRGTNLEKAKLDNAKLG
WCNLFRARIVDLSMAEYDHTTINPNGY

Sequences:

>Translated_187_residues
MIINRIEISSKNIKIENMNAEELLWRYAEGQREFSGIDLSNIELFEANLEGINLEGCNLTRAYLPYANLNQANLQGCNLL
EVKMGDIQLYKANLSNTNIQQGHLSRANLRHANLQGANLRGINLQGANLYHANLRDTDLRYGDLRGTNLEKAKLDNAKLG
WCNLFRARIVDLSMAEYDHTTINPNGY
>Mature_187_residues
MIINRIEISSKNIKIENMNAEELLWRYAEGQREFSGIDLSNIELFEANLEGINLEGCNLTRAYLPYANLNQANLQGCNLL
EVKMGDIQLYKANLSNTNIQQGHLSRANLRHANLQGANLRGINLQGANLYHANLRDTDLRYGDLRGTNLEKAKLDNAKLG
WCNLFRARIVDLSMAEYDHTTINPNGY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=141, Percent_Identity=37.5886524822695, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221377802, Length=148, Percent_Identity=33.7837837837838, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 21180; Mature: 21180

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIINRIEISSKNIKIENMNAEELLWRYAEGQREFSGIDLSNIELFEANLEGINLEGCNLT
CEEEEEEECCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCEE
RAYLPYANLNQANLQGCNLLEVKMGDIQLYKANLSNTNIQQGHLSRANLRHANLQGANLR
EEECCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCEE
GINLQGANLYHANLRDTDLRYGDLRGTNLEKAKLDNAKLGWCNLFRARIVDLSMAEYDHT
EEEECCCEEEECCCCCCCCEECCCCCCCCCHHCCCCCCCCHHHHHHHHHEEEEHHCCCCE
TINPNGY
EECCCCC
>Mature Secondary Structure
MIINRIEISSKNIKIENMNAEELLWRYAEGQREFSGIDLSNIELFEANLEGINLEGCNLT
CEEEEEEECCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCEEEECCCCEE
RAYLPYANLNQANLQGCNLLEVKMGDIQLYKANLSNTNIQQGHLSRANLRHANLQGANLR
EEECCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCEE
GINLQGANLYHANLRDTDLRYGDLRGTNLEKAKLDNAKLGWCNLFRARIVDLSMAEYDHT
EEEECCCEEEECCCCCCCCEECCCCCCCCCHHCCCCCCCCHHHHHHHHHEEEEHHCCCCE
TINPNGY
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]