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The map label for this gene is yjcF [C]

Identifier: 113477694

GI number: 113477694

Start: 6610445

End: 6611059

Strand: Reverse

Name: yjcF [C]

Synonym: Tery_4286

Alternate gene names: 113477694

Gene position: 6611059-6610445 (Counterclockwise)

Preceding gene: 113477695

Following gene: 113477693

Centisome position: 85.3

GC content: 40.81

Gene sequence:

>615_bases
ATGAAAATAACCATGAATAAATCATTATCTCTTGACATTTCAGCCATTAGAATTGGCAAGATTAAACTTTTGGCAAATGC
TCATCTTCCAGGTACAGATTTAACAGGGGCCATGCTCCCAGAAGCAGATTTCTACCAAGCTTACTTGCCTGGGGTTAATT
TTGCTGGTGCTAATTTACAGAAAGCAAAACTGAGGGCTAATCTTAGAGGTGCTGACTTTACTGGTGCTGACTTAAGAGGA
GCAGACTTTCGCAATGCAGACCTACGGGGTGCTATTTTGATTGATGCTCAACTCAGGGAAGCTAGCTTTGCAGGAGCTTT
CTTAAATGGAGCTATATTTAATAATTTGGACCTGAGTGGCATTGATTTTCGTGGGGCTGACTTACGAGGAGTGAATTTGA
GTAAAGCAAATTTGTTTCGGGCAGAATTGAGCAATGCCAATCTTTCTGGCGCAGATTTATCTAGTGCAGATTTAGAAGAG
GCTAATCTAAGTGGAGCAGTACTTAGGGGCACAAACTTACAAAGCTCTAATTTGCTATGTGCTTCAGTAGAACAAGCTGA
CTTGACTGGGACATTACTAACAGATGCTTGTGTTAAAGGTACACCTCTTGATTAA

Upstream 100 bases:

>100_bases
AATCTTATGTTACTTATCTTTATATTTGGGAGTTTGCGTATCCCCCACCTAAAAGGTATGGGTTTTTATCCATCCCCAAA
TTAATCTGCCTAATAACGAA

Downstream 100 bases:

>100_bases
GTTAAAATTCAACCCACCCTTACCCCTTCGAAAGAGTTAGGGCTGTAATATTTTTCTTAAAAGACATCTGGGGAGATGGA
GTCCAGGGGGAAAAGTAGAA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MKITMNKSLSLDISAIRIGKIKLLANAHLPGTDLTGAMLPEADFYQAYLPGVNFAGANLQKAKLRANLRGADFTGADLRG
ADFRNADLRGAILIDAQLREASFAGAFLNGAIFNNLDLSGIDFRGADLRGVNLSKANLFRAELSNANLSGADLSSADLEE
ANLSGAVLRGTNLQSSNLLCASVEQADLTGTLLTDACVKGTPLD

Sequences:

>Translated_204_residues
MKITMNKSLSLDISAIRIGKIKLLANAHLPGTDLTGAMLPEADFYQAYLPGVNFAGANLQKAKLRANLRGADFTGADLRG
ADFRNADLRGAILIDAQLREASFAGAFLNGAIFNNLDLSGIDFRGADLRGVNLSKANLFRAELSNANLSGADLSSADLEE
ANLSGAVLRGTNLQSSNLLCASVEQADLTGTLLTDACVKGTPLD
>Mature_204_residues
MKITMNKSLSLDISAIRIGKIKLLANAHLPGTDLTGAMLPEADFYQAYLPGVNFAGANLQKAKLRANLRGADFTGADLRG
ADFRNADLRGAILIDAQLREASFAGAFLNGAIFNNLDLSGIDFRGADLRGVNLSKANLFRAELSNANLSGADLSSADLEE
ANLSGAVLRGTNLQSSNLLCASVEQADLTGTLLTDACVKGTPLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=156, Percent_Identity=37.8205128205128, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221377802, Length=195, Percent_Identity=32.3076923076923, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 21399; Mature: 21399

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITMNKSLSLDISAIRIGKIKLLANAHLPGTDLTGAMLPEADFYQAYLPGVNFAGANLQ
CEEECCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCE
KAKLRANLRGADFTGADLRGADFRNADLRGAILIDAQLREASFAGAFLNGAIFNNLDLSG
EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCCHHHCCEEECCCCCCC
IDFRGADLRGVNLSKANLFRAELSNANLSGADLSSADLEEANLSGAVLRGTNLQSSNLLC
CCCCCCCCCCCCCCHHHEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEE
ASVEQADLTGTLLTDACVKGTPLD
EECCCCCCCEEEEHHHHCCCCCCC
>Mature Secondary Structure
MKITMNKSLSLDISAIRIGKIKLLANAHLPGTDLTGAMLPEADFYQAYLPGVNFAGANLQ
CEEECCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCE
KAKLRANLRGADFTGADLRGADFRNADLRGAILIDAQLREASFAGAFLNGAIFNNLDLSG
EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHCCHHHCCEEECCCCCCC
IDFRGADLRGVNLSKANLFRAELSNANLSGADLSSADLEEANLSGAVLRGTNLQSSNLLC
CCCCCCCCCCCCCCHHHEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEE
ASVEQADLTGTLLTDACVKGTPLD
EECCCCCCCEEEEHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA