| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477693
Identifier: 113477693
GI number: 113477693
Start: 6609186
End: 6609947
Strand: Reverse
Name: 113477693
Synonym: Tery_4285
Alternate gene names: NA
Gene position: 6609947-6609186 (Counterclockwise)
Preceding gene: 113477694
Following gene: 113477690
Centisome position: 85.29
GC content: 37.4
Gene sequence:
>762_bases ATGGTGACGGCATTGTTTACCAGTACACCAATACTGAATCAAAAAGGCGATCGCCTAGTGAGCAAAGTGGCAGGAGCTGC AATAGCAGCACTGTTTAAGAGCTCGGATCAAGTCGAAGCCAATGTTCGGGCAGAACCAGTGGCCAAATTATTACAGGGTA GTCTGGATGGGTTTGACTTTATAGGTAAAGGAATGCAGATGTATAATGGCCTTCGCATCGAAGTCATGGAACTTTACCTG CAAGCTGTATCAATAGACTTCAGTGCAATTTTTACAGGTAAAGTCAAACTAAGGCAGCCCATCCAGGCAACTCTGAGAAC AGTATTAACCGAGTCAGATTTGACTACTTCTTTCAATACTCCATTTGTGTTAGAGAAACTCCAAAGGCTTAATTATGATG GACAACCCCTACATTTTCAAAATACTCAAATGAATATAACAGAAGATAGAGCTCTCAGAATTAAAACTCAAATTAGGGTG GGAACCTCAGATAAACCTATAGACGTTGATTTTACTGCTAATATTGAAGCGGAGAAGCGACGTAAAATAAAATTTGTTAA TGTCAAATATAGTGGTAATCAAGAATCAGTAGACCTAAGTAAATCTCTAGTTAATCATGTTAATAATTTACTAGATTTAG ATAAATTTGCATTAGAAAATACTCAATTGCGAGTAGATAGACTACGAGTAGGAAGAAATGAAGTTACATTCTATGGTGTA GCTCAGATAGATCAATTTCCTAGTGGGATAAATAAGAAGTAG
Upstream 100 bases:
>100_bases TTGATTAAGCCAAAAGTTAAACTTATAAAGTGCATAAGTACAAGTTAAATTTACAATTATTCACAAAAAGGTTATAATAG TAAAAGCAGATTAAAAAATT
Downstream 100 bases:
>100_bases TCATCACCCTATGAGGAAAAATATTTACCTAAAAACCAAAACACAAACCTTTTTAAAATTACTGATATGTAATTATGTAG TTCAAAAAAGTTTTTCCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MVTALFTSTPILNQKGDRLVSKVAGAAIAALFKSSDQVEANVRAEPVAKLLQGSLDGFDFIGKGMQMYNGLRIEVMELYL QAVSIDFSAIFTGKVKLRQPIQATLRTVLTESDLTTSFNTPFVLEKLQRLNYDGQPLHFQNTQMNITEDRALRIKTQIRV GTSDKPIDVDFTANIEAEKRRKIKFVNVKYSGNQESVDLSKSLVNHVNNLLDLDKFALENTQLRVDRLRVGRNEVTFYGV AQIDQFPSGINKK
Sequences:
>Translated_253_residues MVTALFTSTPILNQKGDRLVSKVAGAAIAALFKSSDQVEANVRAEPVAKLLQGSLDGFDFIGKGMQMYNGLRIEVMELYL QAVSIDFSAIFTGKVKLRQPIQATLRTVLTESDLTTSFNTPFVLEKLQRLNYDGQPLHFQNTQMNITEDRALRIKTQIRV GTSDKPIDVDFTANIEAEKRRKIKFVNVKYSGNQESVDLSKSLVNHVNNLLDLDKFALENTQLRVDRLRVGRNEVTFYGV AQIDQFPSGINKK >Mature_253_residues MVTALFTSTPILNQKGDRLVSKVAGAAIAALFKSSDQVEANVRAEPVAKLLQGSLDGFDFIGKGMQMYNGLRIEVMELYL QAVSIDFSAIFTGKVKLRQPIQATLRTVLTESDLTTSFNTPFVLEKLQRLNYDGQPLHFQNTQMNITEDRALRIKTQIRV GTSDKPIDVDFTANIEAEKRRKIKFVNVKYSGNQESVDLSKSLVNHVNNLLDLDKFALENTQLRVDRLRVGRNEVTFYGV AQIDQFPSGINKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28387; Mature: 28387
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTALFTSTPILNQKGDRLVSKVAGAAIAALFKSSDQVEANVRAEPVAKLLQGSLDGFDF CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHCCCCCHHH IGKGMQMYNGLRIEVMELYLQAVSIDFSAIFTGKVKLRQPIQATLRTVLTESDLTTSFNT HHCHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC PFVLEKLQRLNYDGQPLHFQNTQMNITEDRALRIKTQIRVGTSDKPIDVDFTANIEAEKR CHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCHHHC RKIKFVNVKYSGNQESVDLSKSLVNHVNNLLDLDKFALENTQLRVDRLRVGRNEVTFYGV CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCEEEEEE AQIDQFPSGINKK HHHHHCCCCCCCC >Mature Secondary Structure MVTALFTSTPILNQKGDRLVSKVAGAAIAALFKSSDQVEANVRAEPVAKLLQGSLDGFDF CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHCCCCCHHH IGKGMQMYNGLRIEVMELYLQAVSIDFSAIFTGKVKLRQPIQATLRTVLTESDLTTSFNT HHCHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC PFVLEKLQRLNYDGQPLHFQNTQMNITEDRALRIKTQIRVGTSDKPIDVDFTANIEAEKR CHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCHHHC RKIKFVNVKYSGNQESVDLSKSLVNHVNNLLDLDKFALENTQLRVDRLRVGRNEVTFYGV CEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCEEEEEE AQIDQFPSGINKK HHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA