| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476909
Identifier: 113476909
GI number: 113476909
Start: 5202425
End: 5203063
Strand: Reverse
Name: 113476909
Synonym: Tery_3396
Alternate gene names: NA
Gene position: 5203063-5202425 (Counterclockwise)
Preceding gene: 113476911
Following gene: 113476908
Centisome position: 67.14
GC content: 41.47
Gene sequence:
>639_bases TTGGGTATAGAACTGCGCAGTTATGTATTTATAGACAACTTGCAACCTCAGCACGCCGCCTATATTGGTACAGTAGCCCT TGGCTTTTTACCACTACCAGGTGATACCTCTCTATGGATAGAAATTTCTCCTGGTATTGAAATTAATCGTATTACAGATG TAGCTCTCAAATCTAACTCTGTGCGACCAGGGGTACAATTTGTGGAGCGACTTTATGGTTTGTTGGAAATTCATTCCAGT CGTCAGGGAGATACAAAAGCTGCTGGTCAAGCAATTTTGCAATCTTTAGAGGTTATTGAAAGCGATCGCCTGAAACCTCG TATTATCTCTAGTCAGGTGATCCGTAATATTGACTCTCACCAAGCACAGTTAATTAATCGTAATCGTCGTGGCCAAATGA TTTTAGGTGGCCAAACTCTCTATGTTTTAGAAGTCCAACCTGCCGCCTATGCTGCTTTAGCAGCCAATGAAGCAGAAAAA GCTGCTTTAATTAATATTTTACAAATTCAAGCCGTAGGTAGTTTTGGACGACTTTATTTGGGAGGAGAAGAACGGGATAT TTTGGCAGGTTCTCAAGCAGCTTTGGAGGCCATGAAAAATGTTTCGGGTCGAGAACATTTTGACCAACGCCAAGAATAA
Upstream 100 bases:
>100_bases TAGAATTATGATTGAAAAATTTTGACTTAAGAGAAATCTTTGACATATAATAACGACGATTATAGATTTAATTTTACCCC AGTACATGGAGATTTAGGCC
Downstream 100 bases:
>100_bases ATTAACTAATAGAAGATTCTAGATTAATCTTTCAGGTAGGTTGTAGTTGATGAATCAAGCTTAACACGCCAGCTAGAACC TTTTGATTAACCCTCAGAAT
Product: microcompartments protein
Products: NA
Alternate protein names: Bacterial Microcompartments Protein Family; Microcompartments Protein Family Protein
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MGIELRSYVFIDNLQPQHAAYIGTVALGFLPLPGDTSLWIEISPGIEINRITDVALKSNSVRPGVQFVERLYGLLEIHSS RQGDTKAAGQAILQSLEVIESDRLKPRIISSQVIRNIDSHQAQLINRNRRGQMILGGQTLYVLEVQPAAYAALAANEAEK AALINILQIQAVGSFGRLYLGGEERDILAGSQAALEAMKNVSGREHFDQRQE
Sequences:
>Translated_212_residues MGIELRSYVFIDNLQPQHAAYIGTVALGFLPLPGDTSLWIEISPGIEINRITDVALKSNSVRPGVQFVERLYGLLEIHSS RQGDTKAAGQAILQSLEVIESDRLKPRIISSQVIRNIDSHQAQLINRNRRGQMILGGQTLYVLEVQPAAYAALAANEAEK AALINILQIQAVGSFGRLYLGGEERDILAGSQAALEAMKNVSGREHFDQRQE >Mature_211_residues GIELRSYVFIDNLQPQHAAYIGTVALGFLPLPGDTSLWIEISPGIEINRITDVALKSNSVRPGVQFVERLYGLLEIHSSR QGDTKAAGQAILQSLEVIESDRLKPRIISSQVIRNIDSHQAQLINRNRRGQMILGGQTLYVLEVQPAAYAALAANEAEKA ALINILQIQAVGSFGRLYLGGEERDILAGSQAALEAMKNVSGREHFDQRQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23272; Mature: 23141
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIELRSYVFIDNLQPQHAAYIGTVALGFLPLPGDTSLWIEISPGIEINRITDVALKSNS CCCCEEEEEEEECCCCHHHHHHHHHHHHEEECCCCCEEEEEECCCEEEEHEEEEEECCCC VRPGVQFVERLYGLLEIHSSRQGDTKAAGQAILQSLEVIESDRLKPRIISSQVIRNIDSH CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH QAQLINRNRRGQMILGGQTLYVLEVQPAAYAALAANEAEKAALINILQIQAVGSFGRLYL HHHHHCCCCCCCEEECCCEEEEEEECCHHHHHHHHCCHHHHHHHHHHHEEEECCCCEEEE GGEERDILAGSQAALEAMKNVSGREHFDQRQE CCCCCCEECCCHHHHHHHHCCCCHHHHHHCCC >Mature Secondary Structure GIELRSYVFIDNLQPQHAAYIGTVALGFLPLPGDTSLWIEISPGIEINRITDVALKSNS CCCEEEEEEEECCCCHHHHHHHHHHHHEEECCCCCEEEEEECCCEEEEHEEEEEECCCC VRPGVQFVERLYGLLEIHSSRQGDTKAAGQAILQSLEVIESDRLKPRIISSQVIRNIDSH CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH QAQLINRNRRGQMILGGQTLYVLEVQPAAYAALAANEAEKAALINILQIQAVGSFGRLYL HHHHHCCCCCCCEEECCCEEEEEEECCHHHHHHHHCCHHHHHHHHHHHEEEECCCCEEEE GGEERDILAGSQAALEAMKNVSGREHFDQRQE CCCCCCEECCCHHHHHHHHCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA