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The map label for this gene is hoxA [H]

Identifier: 113476908

GI number: 113476908

Start: 5201657

End: 5202055

Strand: Reverse

Name: hoxA [H]

Synonym: Tery_3395

Alternate gene names: 113476908

Gene position: 5202055-5201657 (Counterclockwise)

Preceding gene: 113476909

Following gene: 113476907

Centisome position: 67.12

GC content: 32.08

Gene sequence:

>399_bases
ATGTCCGAAAAACTTAATTTAATGGTAGTTGATGATGAACCTAATAACTTGGATTTATTGTACCGGACTTTTCGACGTCA
ATTTAAAGTTTTCAGGGCAGAAAATGCTAGGATAGCTATGGAAATTTTGGAAACCCAGGGGGAAATGGCTGTTATTATTT
CTGACCAAAGTATGCCAGATATGACAGGTATTCAATTTCTCATAAAAACAAGAGAGAGCTTTCCTGATACCATTAGAATT
TTATTAAGTGGTTATGAGCAAGAAGAAATAAATTCTGTTGAAAATGATATACAACAAGCTGATATTTTTAAATGTGTAAC
TAAACCTTTTTCTCCTCAAGAACTCAAGGATGTGCTTCAAGAATGTTTGGAAATATATAAAACCAAGAAAAGTTTATAG

Upstream 100 bases:

>100_bases
CTAAGTAGTATACTAATTATTAGATATAGATATTAAAATTTTGAGAATGCTAATTTTGTTGAAAATTGTTCCTTAGATAC
AAATTGCTAAAAAATTAACA

Downstream 100 bases:

>100_bases
AAAAAGATAGGGAATAAGGAATAGGAAAAGACACAATTTTCAAATTATCCTTAACCATAACTTGAGAAGTATAAATACCG
ATACAACCGCTTCTATTAAC

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSEKLNLMVVDDEPNNLDLLYRTFRRQFKVFRAENARIAMEILETQGEMAVIISDQSMPDMTGIQFLIKTRESFPDTIRI
LLSGYEQEEINSVENDIQQADIFKCVTKPFSPQELKDVLQECLEIYKTKKSL

Sequences:

>Translated_132_residues
MSEKLNLMVVDDEPNNLDLLYRTFRRQFKVFRAENARIAMEILETQGEMAVIISDQSMPDMTGIQFLIKTRESFPDTIRI
LLSGYEQEEINSVENDIQQADIFKCVTKPFSPQELKDVLQECLEIYKTKKSL
>Mature_131_residues
SEKLNLMVVDDEPNNLDLLYRTFRRQFKVFRAENARIAMEILETQGEMAVIISDQSMPDMTGIQFLIKTRESFPDTIRIL
LSGYEQEEINSVENDIQQADIFKCVTKPFSPQELKDVLQECLEIYKTKKSL

Specific function: Probable member of the two-component regulatory system involved in the regulation of the hydrogenase activity. HoxA is probably phosphorylated by a sensory component (which could be hoxX) and then acts in conjunction with sigma-54 as a transcriptional act

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 15399; Mature: 15268

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKLNLMVVDDEPNNLDLLYRTFRRQFKVFRAENARIAMEILETQGEMAVIISDQSMPD
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCC
MTGIQFLIKTRESFPDTIRILLSGYEQEEINSVENDIQQADIFKCVTKPFSPQELKDVLQ
HHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ECLEIYKTKKSL
HHHHHHHHHCCC
>Mature Secondary Structure 
SEKLNLMVVDDEPNNLDLLYRTFRRQFKVFRAENARIAMEILETQGEMAVIISDQSMPD
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCCC
MTGIQFLIKTRESFPDTIRILLSGYEQEEINSVENDIQQADIFKCVTKPFSPQELKDVLQ
HHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ECLEIYKTKKSL
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8510650; 12597275 [H]