Click here to switch to the map view.

The map label for this gene is ydiF [H]

Identifier: 113476907

GI number: 113476907

Start: 5199678

End: 5201405

Strand: Reverse

Name: ydiF [H]

Synonym: Tery_3394

Alternate gene names: 113476907

Gene position: 5201405-5199678 (Counterclockwise)

Preceding gene: 113476908

Following gene: 113476906

Centisome position: 67.11

GC content: 33.04

Gene sequence:

>1728_bases
ATGCTGAGACTGGAAAATATAAGTAAGATATATCCTACAGGTGTCATTCTTAAAGATGTTAACTGGGAAGTAAAACCAGG
AGACCGCATTGGCTTAGTGGGTGTTAATGGAGCTGGAAAATCAACTCAATTAAAAATTATTACTGGAGAAATAGAACCTA
CTTCTGGAGAAGTTATTCGCCCTGCAAATTTACACATTGCTTATCTAACTCAAGAATTTGAAGTAAATCCTAATCGTACA
GTTAGAGAGGAATTTTGGACCGTATTTATAGAGGCTAATAAAATACACGAATCTCTTCTACAAGTACAGAGAGAAATGGA
AATTGCTACTCCAGAAAAATTAGATGAACTTATTCATAAATTAGACCGTTTACAACGACAATTTGAAGCTTTAAATGGTT
ATGGATTAGATGCAGAAATTGAAAAAATATTGCCCGAAATGGGGTTTGAATCTGATGATGGCGATCGCTTAGTTAGTGCT
TTTAGTGGTGGTTGGCAAATGCGGATGAGTTTAGGAAAAATTCTTTTGCAAAAGCCAGATGTATTACTCTTAGATGAACC
GACTAACCATCTAGATTTAGAAACAATTGAGTGGCTAGAAAATTATTTAAAAAATTTAGCAACTCCTATGGTGATAGTTT
CCCATGACAGAGAATTTCTTGACCGCCTTTGTACTCAAATTGTGGAAACTGAAAGAGGAGTTTCTACCACTTATTTAGGT
AATTATTCAACTTATTTAGAACAAAAATCAGAAAATAAAGCTGCACAACTTAGCACTTATGAACGACAACAAAAAGAAAT
AGAAAAACAACAAACTTTTATAGAACACTTTCGTGCTAGTGCTACTCGTAGTACTCAAGCAAAAAGCAGAGAAAAACAAT
TAGAAAAAATAGAACTTATAGAAGCTCCTACAGTAGGATTAAAAACTTTAACTTTCCATTTTCCACCAGCACCTCGTAGT
GGTAGAGAAGTTGCAGTCATTAAAGATTTAGTTCATACTTATGGTGATAAAATTCTCTTTTTAGGAGCAAACTTAGAAAT
AGAAAGGGGAGATAGAATTGCTTTTTTAGGGTTGAATGGCTGTGGTAAATCTACTTTACTTCGGATGATTATGGGATTAG
AAAAACCCACAGAAGGTATAGTAGAATTAGGTAAATATAATGTTATACCTAGTTACTTTGAGCAAAACCAAGCAGAAGCT
TTAGACTTAACAAAAACTGTGATAAACATTATCCATGATGAAGTGCCAGATTGGAAAAATGAAGAAGTAAGAACTTTACT
TGGTAATTTCTTGTTTAGTGGTGATACAGTATTTAAAAAAGTAGCTGCTTTGAGTGGTGGAGAAAAAGCACGTTTAGCTT
TAGCAAAAATGCTTCTTAAACCAGGAAATTTTATGTTATTAGATGAGCCGACAAATCATCTAGATATTCCAGCAAAGGAA
ATGTTGGAATCAGCACTAAAAAATTATGATGGAACTGTAATTATTGTTTCCCACGACCGTTACTTTATCTCTCAAGTAGC
TAACAAAATTGTAGAAATCAGAGATGGTGAATTTTATACTTACTTAGGAGACTATCATTATTATATAGATAAACTTGAGT
CAGAAAAAGAATTAGAAAGGTTAGCAAAAATAACTGCAGAAAAAGCTGCTAAAAAAGCTCAAAAAGCTGCTAAGAAAAAA
CAGAAAAAAAAGAAAGTAAAAAATCAAACACCCCCTGAAAAATCCTAA

Upstream 100 bases:

>100_bases
ATATCTTAATACTTATTTCACTTTTTTACTCTAAGTATAAAATAACTGAAACTAAAAAAAACGTGCCTTGCTATTAACCT
AACTAGGAGATAAATTATAA

Downstream 100 bases:

>100_bases
CAAGAAAATCAAAAAGTAATACAATAAAGAAAGGTTTAACCAAAGAAATTATTTCAAAGTATACTTAGTTAAATCTGTAT
TGATTGTAACTAGGAAATCT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 575; Mature: 575

Protein sequence:

>575_residues
MLRLENISKIYPTGVILKDVNWEVKPGDRIGLVGVNGAGKSTQLKIITGEIEPTSGEVIRPANLHIAYLTQEFEVNPNRT
VREEFWTVFIEANKIHESLLQVQREMEIATPEKLDELIHKLDRLQRQFEALNGYGLDAEIEKILPEMGFESDDGDRLVSA
FSGGWQMRMSLGKILLQKPDVLLLDEPTNHLDLETIEWLENYLKNLATPMVIVSHDREFLDRLCTQIVETERGVSTTYLG
NYSTYLEQKSENKAAQLSTYERQQKEIEKQQTFIEHFRASATRSTQAKSREKQLEKIELIEAPTVGLKTLTFHFPPAPRS
GREVAVIKDLVHTYGDKILFLGANLEIERGDRIAFLGLNGCGKSTLLRMIMGLEKPTEGIVELGKYNVIPSYFEQNQAEA
LDLTKTVINIIHDEVPDWKNEEVRTLLGNFLFSGDTVFKKVAALSGGEKARLALAKMLLKPGNFMLLDEPTNHLDIPAKE
MLESALKNYDGTVIIVSHDRYFISQVANKIVEIRDGEFYTYLGDYHYYIDKLESEKELERLAKITAEKAAKKAQKAAKKK
QKKKKVKNQTPPEKS

Sequences:

>Translated_575_residues
MLRLENISKIYPTGVILKDVNWEVKPGDRIGLVGVNGAGKSTQLKIITGEIEPTSGEVIRPANLHIAYLTQEFEVNPNRT
VREEFWTVFIEANKIHESLLQVQREMEIATPEKLDELIHKLDRLQRQFEALNGYGLDAEIEKILPEMGFESDDGDRLVSA
FSGGWQMRMSLGKILLQKPDVLLLDEPTNHLDLETIEWLENYLKNLATPMVIVSHDREFLDRLCTQIVETERGVSTTYLG
NYSTYLEQKSENKAAQLSTYERQQKEIEKQQTFIEHFRASATRSTQAKSREKQLEKIELIEAPTVGLKTLTFHFPPAPRS
GREVAVIKDLVHTYGDKILFLGANLEIERGDRIAFLGLNGCGKSTLLRMIMGLEKPTEGIVELGKYNVIPSYFEQNQAEA
LDLTKTVINIIHDEVPDWKNEEVRTLLGNFLFSGDTVFKKVAALSGGEKARLALAKMLLKPGNFMLLDEPTNHLDIPAKE
MLESALKNYDGTVIIVSHDRYFISQVANKIVEIRDGEFYTYLGDYHYYIDKLESEKELERLAKITAEKAAKKAQKAAKKK
QKKKKVKNQTPPEKS
>Mature_575_residues
MLRLENISKIYPTGVILKDVNWEVKPGDRIGLVGVNGAGKSTQLKIITGEIEPTSGEVIRPANLHIAYLTQEFEVNPNRT
VREEFWTVFIEANKIHESLLQVQREMEIATPEKLDELIHKLDRLQRQFEALNGYGLDAEIEKILPEMGFESDDGDRLVSA
FSGGWQMRMSLGKILLQKPDVLLLDEPTNHLDLETIEWLENYLKNLATPMVIVSHDREFLDRLCTQIVETERGVSTTYLG
NYSTYLEQKSENKAAQLSTYERQQKEIEKQQTFIEHFRASATRSTQAKSREKQLEKIELIEAPTVGLKTLTFHFPPAPRS
GREVAVIKDLVHTYGDKILFLGANLEIERGDRIAFLGLNGCGKSTLLRMIMGLEKPTEGIVELGKYNVIPSYFEQNQAEA
LDLTKTVINIIHDEVPDWKNEEVRTLLGNFLFSGDTVFKKVAALSGGEKARLALAKMLLKPGNFMLLDEPTNHLDIPAKE
MLESALKNYDGTVIIVSHDRYFISQVANKIVEIRDGEFYTYLGDYHYYIDKLESEKELERLAKITAEKAAKKAQKAAKKK
QKKKKVKNQTPPEKS

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=531, Percent_Identity=32.7683615819209, Blast_Score=278, Evalue=7e-75,
Organism=Homo sapiens, GI10947137, Length=542, Percent_Identity=32.1033210332103, Blast_Score=245, Evalue=8e-65,
Organism=Homo sapiens, GI27881506, Length=542, Percent_Identity=32.1033210332103, Blast_Score=245, Evalue=9e-65,
Organism=Homo sapiens, GI10947135, Length=522, Percent_Identity=31.4176245210728, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI69354671, Length=522, Percent_Identity=31.4176245210728, Blast_Score=200, Evalue=4e-51,
Organism=Homo sapiens, GI108773784, Length=504, Percent_Identity=25.3968253968254, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI108773782, Length=504, Percent_Identity=25.3968253968254, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI105990541, Length=242, Percent_Identity=28.099173553719, Blast_Score=76, Evalue=9e-14,
Organism=Homo sapiens, GI255708477, Length=240, Percent_Identity=29.5833333333333, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI42741659, Length=195, Percent_Identity=29.7435897435897, Blast_Score=69, Evalue=2e-11,
Organism=Homo sapiens, GI9961252, Length=199, Percent_Identity=30.1507537688442, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI4505771, Length=199, Percent_Identity=30.1507537688442, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI9961250, Length=199, Percent_Identity=30.1507537688442, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1789751, Length=558, Percent_Identity=33.3333333333333, Blast_Score=325, Evalue=3e-90,
Organism=Escherichia coli, GI1787041, Length=537, Percent_Identity=34.2644320297952, Blast_Score=309, Evalue=2e-85,
Organism=Escherichia coli, GI2367384, Length=535, Percent_Identity=35.1401869158879, Blast_Score=306, Evalue=2e-84,
Organism=Escherichia coli, GI1787182, Length=529, Percent_Identity=34.593572778828, Blast_Score=272, Evalue=4e-74,
Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=28.6274509803922, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87081791, Length=208, Percent_Identity=30.2884615384615, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1790467, Length=233, Percent_Identity=29.1845493562232, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787758, Length=197, Percent_Identity=28.4263959390863, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI48995001, Length=559, Percent_Identity=22.7191413237925, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788210, Length=559, Percent_Identity=22.1824686940966, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1788165, Length=220, Percent_Identity=25.9090909090909, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI48994943, Length=528, Percent_Identity=22.5378787878788, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788506, Length=239, Percent_Identity=24.2677824267782, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787164, Length=240, Percent_Identity=28.3333333333333, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788450, Length=262, Percent_Identity=26.7175572519084, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787105, Length=223, Percent_Identity=27.3542600896861, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1789891, Length=200, Percent_Identity=25, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1788897, Length=246, Percent_Identity=27.6422764227642, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787112, Length=244, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789873, Length=205, Percent_Identity=23.9024390243902, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=536, Percent_Identity=33.0223880597015, Blast_Score=254, Evalue=9e-68,
Organism=Caenorhabditis elegans, GI17559834, Length=549, Percent_Identity=28.5974499089253, Blast_Score=234, Evalue=1e-61,
Organism=Caenorhabditis elegans, GI17555318, Length=546, Percent_Identity=28.5714285714286, Blast_Score=225, Evalue=6e-59,
Organism=Caenorhabditis elegans, GI17555800, Length=508, Percent_Identity=25, Blast_Score=100, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI193202349, Length=203, Percent_Identity=30.5418719211823, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=177, Percent_Identity=29.9435028248588, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=248, Percent_Identity=27.8225806451613, Blast_Score=69, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=236, Percent_Identity=27.5423728813559, Blast_Score=69, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=238, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=295, Percent_Identity=24.406779661017, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=295, Percent_Identity=24.7457627118644, Blast_Score=65, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=295, Percent_Identity=24.7457627118644, Blast_Score=65, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=538, Percent_Identity=32.7137546468402, Blast_Score=268, Evalue=1e-72,
Organism=Saccharomyces cerevisiae, GI6320874, Length=554, Percent_Identity=30.6859205776173, Blast_Score=251, Evalue=2e-67,
Organism=Saccharomyces cerevisiae, GI6325030, Length=379, Percent_Identity=28.7598944591029, Blast_Score=135, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6324314, Length=381, Percent_Identity=27.5590551181102, Blast_Score=124, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6323278, Length=375, Percent_Identity=27.7333333333333, Blast_Score=119, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24666836, Length=515, Percent_Identity=34.1747572815534, Blast_Score=281, Evalue=1e-75,
Organism=Drosophila melanogaster, GI24642252, Length=567, Percent_Identity=30.5114638447972, Blast_Score=255, Evalue=5e-68,
Organism=Drosophila melanogaster, GI18859989, Length=567, Percent_Identity=30.5114638447972, Blast_Score=255, Evalue=5e-68,
Organism=Drosophila melanogaster, GI24641342, Length=547, Percent_Identity=30.164533820841, Blast_Score=233, Evalue=3e-61,
Organism=Drosophila melanogaster, GI45550390, Length=250, Percent_Identity=30, Blast_Score=73, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24659289, Length=239, Percent_Identity=25.9414225941423, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI17136662, Length=206, Percent_Identity=26.6990291262136, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI85726357, Length=164, Percent_Identity=28.6585365853659, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24661270, Length=221, Percent_Identity=26.2443438914027, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21355589, Length=221, Percent_Identity=26.2443438914027, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 65366; Mature: 65366

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLENISKIYPTGVILKDVNWEVKPGDRIGLVGVNGAGKSTQLKIITGEIEPTSGEVIR
CCCCCCCHHHCCCCEEEECCCEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEC
PANLHIAYLTQEFEVNPNRTVREEFWTVFIEANKIHESLLQVQREMEIATPEKLDELIHK
CCCEEEEEEEEEEECCCCCHHHHHHEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LDRLQRQFEALNGYGLDAEIEKILPEMGFESDDGDRLVSAFSGGWQMRMSLGKILLQKPD
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC
VLLLDEPTNHLDLETIEWLENYLKNLATPMVIVSHDREFLDRLCTQIVETERGVSTTYLG
EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEC
NYSTYLEQKSENKAAQLSTYERQQKEIEKQQTFIEHFRASATRSTQAKSREKQLEKIELI
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAPTVGLKTLTFHFPPAPRSGREVAVIKDLVHTYGDKILFLGANLEIERGDRIAFLGLNG
CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCEEEECCCEEEEEEECC
CGKSTLLRMIMGLEKPTEGIVELGKYNVIPSYFEQNQAEALDLTKTVINIIHDEVPDWKN
CCHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
EEVRTLLGNFLFSGDTVFKKVAALSGGEKARLALAKMLLKPGNFMLLDEPTNHLDIPAKE
HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH
MLESALKNYDGTVIIVSHDRYFISQVANKIVEIRDGEFYTYLGDYHYYIDKLESEKELER
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHCCHHHHHH
LAKITAEKAAKKAQKAAKKKQKKKKVKNQTPPEKS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLRLENISKIYPTGVILKDVNWEVKPGDRIGLVGVNGAGKSTQLKIITGEIEPTSGEVIR
CCCCCCCHHHCCCCEEEECCCEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEC
PANLHIAYLTQEFEVNPNRTVREEFWTVFIEANKIHESLLQVQREMEIATPEKLDELIHK
CCCEEEEEEEEEEECCCCCHHHHHHEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LDRLQRQFEALNGYGLDAEIEKILPEMGFESDDGDRLVSAFSGGWQMRMSLGKILLQKPD
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCC
VLLLDEPTNHLDLETIEWLENYLKNLATPMVIVSHDREFLDRLCTQIVETERGVSTTYLG
EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEC
NYSTYLEQKSENKAAQLSTYERQQKEIEKQQTFIEHFRASATRSTQAKSREKQLEKIELI
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAPTVGLKTLTFHFPPAPRSGREVAVIKDLVHTYGDKILFLGANLEIERGDRIAFLGLNG
CCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCEEEECCCEEEEEEECC
CGKSTLLRMIMGLEKPTEGIVELGKYNVIPSYFEQNQAEALDLTKTVINIIHDEVPDWKN
CCHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
EEVRTLLGNFLFSGDTVFKKVAALSGGEKARLALAKMLLKPGNFMLLDEPTNHLDIPAKE
HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHH
MLESALKNYDGTVIIVSHDRYFISQVANKIVEIRDGEFYTYLGDYHYYIDKLESEKELER
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHCCHHHHHH
LAKITAEKAAKKAQKAAKKKQKKKKVKNQTPPEKS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]