| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476906
Identifier: 113476906
GI number: 113476906
Start: 5198881
End: 5199489
Strand: Reverse
Name: 113476906
Synonym: Tery_3393
Alternate gene names: NA
Gene position: 5199489-5198881 (Counterclockwise)
Preceding gene: 113476907
Following gene: 113476904
Centisome position: 67.09
GC content: 33.5
Gene sequence:
>609_bases ATGTCTATCCTCTTCTTTTTGAAAAACACATTCTTACTAAGCAGTATAATCATACTATGGGGTTATTTACAGCCAACACT TAAAGCATTTAATTATCCAATTAATGCTTATAATACCCACAATAATAAAGTATTAATAGCTCAAAAATCTACAGCAGTCG CTGCAGAATTACAGCAAATTTTGCCAAAAATAAAAGAACAAACTCAAGTACCAATTTTGCTACCTACTCAATTATTAATT ACAGGTACAGATAGAAAAATTTATGTCGAGGGTAAAGGTACAAGTAATAGTTATGAAATTACCTTAGCCTTTACACCTAA TTGTAACCATAGTACTGCTTGTTCCATTGGTTATCTTAGTGCTGAAAAAGGAGGTAAACCTTTAGAAGATGAATTTAGTA GGGAATATCCTTTAGTGCAAAACATTAAAGGATATTTTAGACCTTTAACCTGTGGAGCATCTTGTGCGCCTCCAATTATC GGCTGGGAATATCAAGGAGTATTTTATCGCATGGCTTTTAAAGGTGTTGGTCAAAGTCCCGAAATTGAAGGAGAAACTTT AGTAAAAATGGCTAATTCTGCCATTGAAGTAGGGGCAAGATCAGATTAA
Upstream 100 bases:
>100_bases ACTAGGAAATCTAATAACTGTATACCTGTATTTATAGATAAAACTTATGGCTTTAAACTTCATTCAATATTCAGTTTAGT CTTTCAGTAGGATTTTAATT
Downstream 100 bases:
>100_bases TGATACTTGAATAATGATGAGATAATTAGCTATAGAACAAATAAATTAGTTTGAGGGAAAAAGTATTTAAGGATTTAATT AATACAAAAAAATCATATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MSILFFLKNTFLLSSIIILWGYLQPTLKAFNYPINAYNTHNNKVLIAQKSTAVAAELQQILPKIKEQTQVPILLPTQLLI TGTDRKIYVEGKGTSNSYEITLAFTPNCNHSTACSIGYLSAEKGGKPLEDEFSREYPLVQNIKGYFRPLTCGASCAPPII GWEYQGVFYRMAFKGVGQSPEIEGETLVKMANSAIEVGARSD
Sequences:
>Translated_202_residues MSILFFLKNTFLLSSIIILWGYLQPTLKAFNYPINAYNTHNNKVLIAQKSTAVAAELQQILPKIKEQTQVPILLPTQLLI TGTDRKIYVEGKGTSNSYEITLAFTPNCNHSTACSIGYLSAEKGGKPLEDEFSREYPLVQNIKGYFRPLTCGASCAPPII GWEYQGVFYRMAFKGVGQSPEIEGETLVKMANSAIEVGARSD >Mature_201_residues SILFFLKNTFLLSSIIILWGYLQPTLKAFNYPINAYNTHNNKVLIAQKSTAVAAELQQILPKIKEQTQVPILLPTQLLIT GTDRKIYVEGKGTSNSYEITLAFTPNCNHSTACSIGYLSAEKGGKPLEDEFSREYPLVQNIKGYFRPLTCGASCAPPIIG WEYQGVFYRMAFKGVGQSPEIEGETLVKMANSAIEVGARSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22349; Mature: 22218
Theoretical pI: Translated: 8.29; Mature: 8.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSILFFLKNTFLLSSIIILWGYLQPTLKAFNYPINAYNTHNNKVLIAQKSTAVAAELQQI CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCHHHHHHHHHH LPKIKEQTQVPILLPTQLLITGTDRKIYVEGKGTSNSYEITLAFTPNCNHSTACSIGYLS HHHHHHHCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEE AEKGGKPLEDEFSREYPLVQNIKGYFRPLTCGASCAPPIIGWEYQGVFYRMAFKGVGQSP CCCCCCCCHHHHHCCCCHHHHHHHHCEEECCCCCCCCCCCCEECCCEEEEEEECCCCCCC EIEGETLVKMANSAIEVGARSD CCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SILFFLKNTFLLSSIIILWGYLQPTLKAFNYPINAYNTHNNKVLIAQKSTAVAAELQQI EEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCHHHHHHHHHH LPKIKEQTQVPILLPTQLLITGTDRKIYVEGKGTSNSYEITLAFTPNCNHSTACSIGYLS HHHHHHHCCCCEEECCEEEEEECCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEE AEKGGKPLEDEFSREYPLVQNIKGYFRPLTCGASCAPPIIGWEYQGVFYRMAFKGVGQSP CCCCCCCCHHHHHCCCCHHHHHHHHCEEECCCCCCCCCCCCEECCCEEEEEEECCCCCCC EIEGETLVKMANSAIEVGARSD CCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA