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The map label for this gene is ydcM [C]

Identifier: 113476809

GI number: 113476809

Start: 5042852

End: 5043283

Strand: Reverse

Name: ydcM [C]

Synonym: Tery_3286

Alternate gene names: 113476809

Gene position: 5043283-5042852 (Counterclockwise)

Preceding gene: 113476810

Following gene: 113476808

Centisome position: 65.07

GC content: 37.27

Gene sequence:

>432_bases
ATGCCTAGTAAAATCACTGTCAAACTTGATCCTAGTGGTAGATGGTCTATATCTTTGAGAATTAATGACACCAGAGATTT
GAGACTCAATCCGACTAAGAAACAAGTAGGCATTTACTTGGGCATGATCAGCTTACTGACTACCAGCGATAGAGAAGAAG
TGCCCAATCAAAATAATCTTCAAAAGTTGCACAAAAGACTGAGGTTCGCTCAGAAGTCTCTGAGCAGAAAAGCCAAAGGG
TCTAATAATTGTCAGAAAACTCGACTTAAAGTAGCTAGGATACATGCCTTGATTAAAGATTCAAGACTAGACTACACCCA
TAAGCTAACTACTCAACTAATAAGAGAAAACCAAACAATAGTAATTGAGGATTTAGCTACAAGTAACATGGTCAAGAATC
ACTTGTTAGCAATAGCTATCAGTTCATGCTAA

Upstream 100 bases:

>100_bases
TACTAAGGCAGCCTTCTAGTGGAAAGATGGCCAAGTCTATTTAGCTAAGTGTTTAGAACCCTTATCTATTAGATCGATCA
GGCAATTACCACCAGGTTGT

Downstream 100 bases:

>100_bases
CTGGGGAGAAATAGCCAAGCAATTACAGTACAAAGCTGAGTGGTATGGACTGGAATTAATTAAAATTGATAGATATTTTC
CCAGTTCTAAGGGTTGTTCT

Product: putative transposase, IS891/IS1136/IS1341

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MPSKITVKLDPSGRWSISLRINDTRDLRLNPTKKQVGIYLGMISLLTTSDREEVPNQNNLQKLHKRLRFAQKSLSRKAKG
SNNCQKTRLKVARIHALIKDSRLDYTHKLTTQLIRENQTIVIEDLATSNMVKNHLLAIAISSC

Sequences:

>Translated_143_residues
MPSKITVKLDPSGRWSISLRINDTRDLRLNPTKKQVGIYLGMISLLTTSDREEVPNQNNLQKLHKRLRFAQKSLSRKAKG
SNNCQKTRLKVARIHALIKDSRLDYTHKLTTQLIRENQTIVIEDLATSNMVKNHLLAIAISSC
>Mature_142_residues
PSKITVKLDPSGRWSISLRINDTRDLRLNPTKKQVGIYLGMISLLTTSDREEVPNQNNLQKLHKRLRFAQKSLSRKAKGS
NNCQKTRLKVARIHALIKDSRLDYTHKLTTQLIRENQTIVIEDLATSNMVKNHLLAIAISSC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=121, Percent_Identity=40.495867768595, Blast_Score=87, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 16316; Mature: 16185

Theoretical pI: Translated: 11.15; Mature: 11.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSKITVKLDPSGRWSISLRINDTRDLRLNPTKKQVGIYLGMISLLTTSDREEVPNQNNL
CCCEEEEEECCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHCCCCCCH
QKLHKRLRFAQKSLSRKAKGSNNCQKTRLKVARIHALIKDSRLDYTHKLTTQLIRENQTI
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
VIEDLATSNMVKNHLLAIAISSC
EEEEHHHHHHHHHHEEEEEEECC
>Mature Secondary Structure 
PSKITVKLDPSGRWSISLRINDTRDLRLNPTKKQVGIYLGMISLLTTSDREEVPNQNNL
CCEEEEEECCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHCCCCCCH
QKLHKRLRFAQKSLSRKAKGSNNCQKTRLKVARIHALIKDSRLDYTHKLTTQLIRENQTI
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEE
VIEDLATSNMVKNHLLAIAISSC
EEEEHHHHHHHHHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]