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The map label for this gene is yjcF [C]

Identifier: 113476800

GI number: 113476800

Start: 5026980

End: 5027939

Strand: Reverse

Name: yjcF [C]

Synonym: Tery_3276

Alternate gene names: 113476800

Gene position: 5027939-5026980 (Counterclockwise)

Preceding gene: 113476801

Following gene: 113476799

Centisome position: 64.88

GC content: 37.5

Gene sequence:

>960_bases
ATGAATAGTAGTGAAATTCTCAGGAAATATGCAGCAGGAAAAACCGATTTTCAAGGAATTAATCTCAAAGGTATCCAATT
AAATAAAGCGGACTTAATAGGTATAAATTTTTCCCAGGCCGATCTTCAGGGAGCAGAACTAGTGCTAGCATTTCTAAATC
GAGTTAATTTACAATGCGCTAATTTAATTACAGCTAAACTTAGTGGTGCATATCTGACTCAAGCAAATTTACAGGGTGTT
AAGATGGCTGATGTTGATCTTCATGGGGCAAACTTACAGAATGCAGACTTGCGAAAGGCTAATCTAGAGTTAGCAAACTT
GATGGATGCTAATTTGAGTGGGGCAGATATGCGAGCAATTAATCTACAAGGTGCTGACTTGCGGGGTGCTTATATGCGTG
GGGCAAGTTTCCGCTATCAAAAACGGGTTTATGAAATAGCTAATCTTCGCGGGGTAAATATGCAGGGAGCTGATATGCGT
GGTGTTGATTTGACTGGAGCTGATTTAACTAAAGCTGATTTGAGAGGGGCAAATTTAAGTGAGGTTGTACTTAGAGGCGC
TAAGTTAACTAAAGCAAATATGCGTGAAGTAGTTCTAGATAATGCATCATTAACAGAAGCTAATTTGGTAGAAGTTAATT
TATCTGGGGCTAGTTTAATTAGTGCTAAATTTGAAAGAGCTGAATTAATGGATACATGCTTGAATGAGGCTAACTTAACT
GGTGCAAGTATGGTAGATGCAAAATTGGGTAAAGCTCAGTTAGTAGGGACTAACCTAACTAAAGTGAATTTAGTCAGAGC
TGATCTGAGTCGAGCTAACTTAAGTGAAGCAAATCTTACTAAAGCGGACTTAACTGATGCTTATCTAGCAAAAGCAAATT
TATCTAATTCTAACCTTCATGGGTCTATTTTAACTAGGGTTGAATTAAGTACAGCTAATTTAAGTGGTACTCAAATGTAA

Upstream 100 bases:

>100_bases
CATGATTAAACTCAGTCATAAATTATTTTTGACTTTTGCATTTTGCACTTTTGTCTAGCTTATAGCCCTATACTTTTTTA
AATAAAGGAAAATTATTATA

Downstream 100 bases:

>100_bases
GGTGCTTTTATGCTTAATAGAAATCTTCATAAATAAGATGATCAGGACTTAGGCACATACTGATAGAGACAATTGATGCA
TTCCTTCTACTAGACCGACA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MNSSEILRKYAAGKTDFQGINLKGIQLNKADLIGINFSQADLQGAELVLAFLNRVNLQCANLITAKLSGAYLTQANLQGV
KMADVDLHGANLQNADLRKANLELANLMDANLSGADMRAINLQGADLRGAYMRGASFRYQKRVYEIANLRGVNMQGADMR
GVDLTGADLTKADLRGANLSEVVLRGAKLTKANMREVVLDNASLTEANLVEVNLSGASLISAKFERAELMDTCLNEANLT
GASMVDAKLGKAQLVGTNLTKVNLVRADLSRANLSEANLTKADLTDAYLAKANLSNSNLHGSILTRVELSTANLSGTQM

Sequences:

>Translated_319_residues
MNSSEILRKYAAGKTDFQGINLKGIQLNKADLIGINFSQADLQGAELVLAFLNRVNLQCANLITAKLSGAYLTQANLQGV
KMADVDLHGANLQNADLRKANLELANLMDANLSGADMRAINLQGADLRGAYMRGASFRYQKRVYEIANLRGVNMQGADMR
GVDLTGADLTKADLRGANLSEVVLRGAKLTKANMREVVLDNASLTEANLVEVNLSGASLISAKFERAELMDTCLNEANLT
GASMVDAKLGKAQLVGTNLTKVNLVRADLSRANLSEANLTKADLTDAYLAKANLSNSNLHGSILTRVELSTANLSGTQM
>Mature_319_residues
MNSSEILRKYAAGKTDFQGINLKGIQLNKADLIGINFSQADLQGAELVLAFLNRVNLQCANLITAKLSGAYLTQANLQGV
KMADVDLHGANLQNADLRKANLELANLMDANLSGADMRAINLQGADLRGAYMRGASFRYQKRVYEIANLRGVNMQGADMR
GVDLTGADLTKADLRGANLSEVVLRGAKLTKANMREVVLDNASLTEANLVEVNLSGASLISAKFERAELMDTCLNEANLT
GASMVDAKLGKAQLVGTNLTKVNLVRADLSRANLSEANLTKADLTDAYLAKANLSNSNLHGSILTRVELSTANLSGTQM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=181, Percent_Identity=37.5690607734807, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI1790502, Length=170, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=5e-12,
Organism=Drosophila melanogaster, GI221377802, Length=178, Percent_Identity=35.9550561797753, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 34086; Mature: 34086

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSEILRKYAAGKTDFQGINLKGIQLNKADLIGINFSQADLQGAELVLAFLNRVNLQCA
CCHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCHHHCCHHHHHHHHHHHCCCHHH
NLITAKLSGAYLTQANLQGVKMADVDLHGANLQNADLRKANLELANLMDANLSGADMRAI
HEEHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCCCHHHCCHHHHHHCCCCCCCCEEEE
NLQGADLRGAYMRGASFRYQKRVYEIANLRGVNMQGADMRGVDLTGADLTKADLRGANLS
EECCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHCCCCCHH
EVVLRGAKLTKANMREVVLDNASLTEANLVEVNLSGASLISAKFERAELMDTCLNEANLT
HHHHCCCCCCCCCHHHHEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
GASMVDAKLGKAQLVGTNLTKVNLVRADLSRANLSEANLTKADLTDAYLAKANLSNSNLH
CCHHHHHHCCCEEEEECCCEEEEEEEHHHHHCCCCCCCCCHHHCCHHHHHCCCCCCCCCC
GSILTRVELSTANLSGTQM
CEEEEEEEEEECCCCCCCC
>Mature Secondary Structure
MNSSEILRKYAAGKTDFQGINLKGIQLNKADLIGINFSQADLQGAELVLAFLNRVNLQCA
CCHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCHHHCCHHHHHHHHHHHCCCHHH
NLITAKLSGAYLTQANLQGVKMADVDLHGANLQNADLRKANLELANLMDANLSGADMRAI
HEEHHHCCCEEEEECCCCCEEEEEEEECCCCCCCCCCHHHCCHHHHHHCCCCCCCCEEEE
NLQGADLRGAYMRGASFRYQKRVYEIANLRGVNMQGADMRGVDLTGADLTKADLRGANLS
EECCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHCCCCCHH
EVVLRGAKLTKANMREVVLDNASLTEANLVEVNLSGASLISAKFERAELMDTCLNEANLT
HHHHCCCCCCCCCHHHHEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
GASMVDAKLGKAQLVGTNLTKVNLVRADLSRANLSEANLTKADLTDAYLAKANLSNSNLH
CCHHHHHHCCCEEEEECCCEEEEEEEHHHHHCCCCCCCCCHHHCCHHHHHCCCCCCCCCC
GSILTRVELSTANLSGTQM
CEEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]