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The map label for this gene is lrtA [H]

Identifier: 113476720

GI number: 113476720

Start: 4864218

End: 4864865

Strand: Reverse

Name: lrtA [H]

Synonym: Tery_3183

Alternate gene names: 113476720

Gene position: 4864865-4864218 (Counterclockwise)

Preceding gene: 113476722

Following gene: 113476717

Centisome position: 62.77

GC content: 37.65

Gene sequence:

>648_bases
ATGAAGCTTGTTATCCAGGGTAAAAATATAGAAATAACCGATTCCATTCACGAATATGTTAATCAAAAAATTGAAAAAGC
AGTTAATCATTTTCAACAACTAACCACCGAAGTAGATGTACATCTGTCAGTCGCTCGAAATCCGCGCATAAATCCTAAGC
AGACAGCAGAAGTAACTATCTACGCTAACGGTACAGTCATTCGTGCCCAGGAAAGTAGCGAAAATTTGTATGCTAGCATT
GACTTGGTAGCAGATAAAATTGCACGCCAACTCAGAAAGTACAAAGAAAAGCGTCAATCTAAGGTTAATAAAACTAAAAC
TGTTGATTTGATTGAATCACAGCCAGTTGTGGAGAATTTAATTGGCGATCGCCAAGCAGAGCTACCCAGTGAAGTAGTAC
GGACTAAATATTTTCCTATGCCCAGTATGACAGTAGAGGAAGCCTTGGAGCAGCTACAACTTATTGACCATGATTTCTAT
ATGTTTTCCAATGGAGTAACAGGTGAAATTAATGTTATTTACAAACGTTACCATCATGGTGGTTATGGTTTAATTCAACC
ACGACCTAATGGTAATGATAATGGTAATAATGGAAAAGTATCCGATAGTATTGGTGAGGCAGCAGGCCTTAAATCTACTC
ATATCTAG

Upstream 100 bases:

>100_bases
CAAGGGATGCAAAGGATTCTAAAGATAGGATGCTGGGGATCATACAAAGTGCTATCCTTATATAATAATAGTAAGCCCAG
AATATTAGCGGAGGGAGCTT

Downstream 100 bases:

>100_bases
AATTATCTTAATATCATGTCCAGTTAATAGTTCTAATTAAAGTTTGTAGTAGGTTTTGAGGAGTCAGTATAGATATTTCA
TCTCCTCAAGTTCTACTACA

Product: sigma 54 modulation protein / SSU ribosomal protein S30P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKLVIQGKNIEITDSIHEYVNQKIEKAVNHFQQLTTEVDVHLSVARNPRINPKQTAEVTIYANGTVIRAQESSENLYASI
DLVADKIARQLRKYKEKRQSKVNKTKTVDLIESQPVVENLIGDRQAELPSEVVRTKYFPMPSMTVEEALEQLQLIDHDFY
MFSNGVTGEINVIYKRYHHGGYGLIQPRPNGNDNGNNGKVSDSIGEAAGLKSTHI

Sequences:

>Translated_215_residues
MKLVIQGKNIEITDSIHEYVNQKIEKAVNHFQQLTTEVDVHLSVARNPRINPKQTAEVTIYANGTVIRAQESSENLYASI
DLVADKIARQLRKYKEKRQSKVNKTKTVDLIESQPVVENLIGDRQAELPSEVVRTKYFPMPSMTVEEALEQLQLIDHDFY
MFSNGVTGEINVIYKRYHHGGYGLIQPRPNGNDNGNNGKVSDSIGEAAGLKSTHI
>Mature_215_residues
MKLVIQGKNIEITDSIHEYVNQKIEKAVNHFQQLTTEVDVHLSVARNPRINPKQTAEVTIYANGTVIRAQESSENLYASI
DLVADKIARQLRKYKEKRQSKVNKTKTVDLIESQPVVENLIGDRQAELPSEVVRTKYFPMPSMTVEEALEQLQLIDHDFY
MFSNGVTGEINVIYKRYHHGGYGLIQPRPNGNDNGNNGKVSDSIGEAAGLKSTHI

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=97, Percent_Identity=37.1134020618557, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 24232; Mature: 24232

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVIQGKNIEITDSIHEYVNQKIEKAVNHFQQLTTEVDVHLSVARNPRINPKQTAEVTI
CEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEE
YANGTVIRAQESSENLYASIDLVADKIARQLRKYKEKRQSKVNKTKTVDLIESQPVVENL
EECCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHCCCHHHHHH
IGDRQAELPSEVVRTKYFPMPSMTVEEALEQLQLIDHDFYMFSNGVTGEINVIYKRYHHG
HCCCHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHEEECCCCCCEEEEEEEEEECC
GYGLIQPRPNGNDNGNNGKVSDSIGEAAGLKSTHI
CEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MKLVIQGKNIEITDSIHEYVNQKIEKAVNHFQQLTTEVDVHLSVARNPRINPKQTAEVTI
CEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEE
YANGTVIRAQESSENLYASIDLVADKIARQLRKYKEKRQSKVNKTKTVDLIESQPVVENL
EECCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHCCCHHHHHH
IGDRQAELPSEVVRTKYFPMPSMTVEEALEQLQLIDHDFYMFSNGVTGEINVIYKRYHHG
HCCCHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHEEECCCCCCEEEEEEEEEECC
GYGLIQPRPNGNDNGNNGKVSDSIGEAAGLKSTHI
CEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]