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The map label for this gene is 113476722

Identifier: 113476722

GI number: 113476722

Start: 4866532

End: 4867038

Strand: Reverse

Name: 113476722

Synonym: Tery_3185

Alternate gene names: NA

Gene position: 4867038-4866532 (Counterclockwise)

Preceding gene: 113476724

Following gene: 113476720

Centisome position: 62.8

GC content: 33.93

Gene sequence:

>507_bases
ATGAATAGTTGTATATTAATGGTACAAATCACCAAAGATCCAGAACTGCGCTATACAGCAGATTCTCAATTGCCAGTAGC
AGAAATGATAGTAGAATTTCCTAATTTAGGAGTTAATAATAAACCTGCTTTACTAAAAGTAGTAGCGTGGGGAGACTTAG
CTGAACAAGTCAACGAAAAATATCACCAAGAAGATTATGTTATTGTTGAAGGCCGCTTAAGTATAAACACTATTGAACGA
CCAGAAGGATTTAAAGAAAAACGAGCTGAATTAACAGCCTCCAAAATCTATCCTATTAGCTCTGAGGCTATGACTCAAGA
TGAAAATCAAATGCCAACAAATAAATCCAGTAAGAGAAATTTCACTAAACAGCAATCACAGGAAGAACAATATAGTAATG
TTGTAGATTTAAAATCTCGTCTTAGCTCTACTGTTAATGAAGAATCAAAAACTGATCTAGTAGAGAGTGAATTACCAGCT
GACGATTTTGATCCTATTCCTTTTTAA

Upstream 100 bases:

>100_bases
TCATAATTGTATAAATAAGTTGAGATGAATATTGGTAAAATCAAAGAATATCATCCATATTCCTTTGTTCAAAGCAAGTT
ATTCTTAGTCAAAAATTAAA

Downstream 100 bases:

>100_bases
GGAAGTAGTCAACACTTAGTCAAATAATCAGTAGGATAATTTTTTAAGCCAGGGACAAGGGGGCTTGAGCCCAGAGCTGC
TAAAAGCTGATAACTAGTCA

Product: single-strand binding protein/primosomal replication protein n

Products: NA

Alternate protein names: Thylakoid-associated SSB [H]

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNSCILMVQITKDPELRYTADSQLPVAEMIVEFPNLGVNNKPALLKVVAWGDLAEQVNEKYHQEDYVIVEGRLSINTIER
PEGFKEKRAELTASKIYPISSEAMTQDENQMPTNKSSKRNFTKQQSQEEQYSNVVDLKSRLSSTVNEESKTDLVESELPA
DDFDPIPF

Sequences:

>Translated_168_residues
MNSCILMVQITKDPELRYTADSQLPVAEMIVEFPNLGVNNKPALLKVVAWGDLAEQVNEKYHQEDYVIVEGRLSINTIER
PEGFKEKRAELTASKIYPISSEAMTQDENQMPTNKSSKRNFTKQQSQEEQYSNVVDLKSRLSSTVNEESKTDLVESELPA
DDFDPIPF
>Mature_168_residues
MNSCILMVQITKDPELRYTADSQLPVAEMIVEFPNLGVNNKPALLKVVAWGDLAEQVNEKYHQEDYVIVEGRLSINTIER
PEGFKEKRAELTASKIYPISSEAMTQDENQMPTNKSSKRNFTKQQSQEEQYSNVVDLKSRLSSTVNEESKTDLVESELPA
DDFDPIPF

Specific function: Unknown

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 19102; Mature: 19102

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSCILMVQITKDPELRYTADSQLPVAEMIVEFPNLGVNNKPALLKVVAWGDLAEQVNEK
CCCEEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHH
YHQEDYVIVEGRLSINTIERPEGFKEKRAELTASKIYPISSEAMTQDENQMPTNKSSKRN
HCCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHHH
FTKQQSQEEQYSNVVDLKSRLSSTVNEESKTDLVESELPADDFDPIPF
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNSCILMVQITKDPELRYTADSQLPVAEMIVEFPNLGVNNKPALLKVVAWGDLAEQVNEK
CCCEEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHH
YHQEDYVIVEGRLSINTIERPEGFKEKRAELTASKIYPISSEAMTQDENQMPTNKSSKRN
HCCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHHH
FTKQQSQEEQYSNVVDLKSRLSSTVNEESKTDLVESELPADDFDPIPF
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]